data-workflows copilot-instructions.md

Repository instructions for boettiger-lab/data-workflows, a project that prepares geospatial datasets for cloud use. It explains the repository layout, setup, dataset-processing workflow, and available skills.

In plain words
What is it for?
Use it when processing datasets, creating Kubernetes job files with the cng-datasets command-line tool, or writing dataset metadata.
Why use it?
It prevents agents from searching for nonexistent application code or running processing work in the wrong environment.

Instructions file for GitHub Copilot

Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

agentmods
npx agentmods add instructions/boettiger-lab/data-workflows/copilot-instructions
Clone the repo
git clone --depth 1 https://github.com/boettiger-lab/data-workflows

Made for: GitHub Copilot.

Per session 455 This file is loaded in full into every session.
When invoked 455 The same file — it is already loaded in full.
Security scan A 0 findings. Scan, not verified.
Origin original No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5 $0.00455 $0.00455
Opus 5 $0.00228 $0.00228
Sonnet 5 $0.00091 $0.00091
Haiku 4.5 $0.00046 $0.00046

Measured 2d ago against content hash 932fdcc07c23, method: parsed. Prices are Anthropic first-party input rates as of 2026-08-30, from the pricing page.

Security

Grade A, and why

data-workflows copilot-instructions.md scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 2d ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

.github/copilot-instructions.md · 38 lines

What it actually says

Start Here

Read AGENTS.md before doing anything. It explains the workflow for processing datasets.

This repo has no source code. Do not look for Python modules to study. The cng-datasets CLI is installed via pip and used as a black box — see its README for CLI docs.

Repository Structure

  • AGENTS.md — complete instructions for processing datasets
  • DATASET_DOCUMENTATION_WORKFLOW.md — how to create STAC metadata after processing
  • todo.md — dataset completion tracker
  • catalog/ — per-dataset configs: k8s YAML, STAC metadata, processing notes

Local Environment

The cng-datasets CLI is used to generate k8s job YAML files (not for processing data locally).

Setup:

uv venv
source .venv/bin/activate
uv pip install git+https://github.com/boettiger-lab/datasets.git

Do not run data processing commands (vector, raster, repartition) locally — those run inside k8s pods.

Available Skills

Detailed reference guides are in .claude/skills/. Do not read these proactively — load a skill only when the task requires it:

Skill file When to load
.claude/skills/stac-authoring/SKILL.md Writing or editing any stac-collection.json or dataset README
.claude/skills/raster-hexing/SKILL.md Ingesting or re-hexing a GeoTIFF/COG — resolution, reducer, mosaicking
.claude/skills/hex-tuning/SKILL.md A hex job OOMs, or choosing native/parent H3 resolutions and chunk sizes
.claude/skills/job-troubleshooting/SKILL.md A job fails, hangs, or a published parquet will not read
.claude/skills/dataset-recipes/SKILL.md Starting an ingest that resembles a worked example
Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 2d ago First seen · 38 lines · 455 tokens per session scan A 932fdcc07c23

Subscribe to this mod's changes

data-workflows copilot-instructions.md is an instructions file published in the GitHub repository boettiger-lab/data-workflows (5 stars, last pushed 2d ago), licensed BSD-3-Clause. It adds 455 tokens to every session, about $0.0023 per session on Opus 5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-31.

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