Cottontail: Instructions file for Codex

AGENTS.md

Cottontail AGENTS.md is an instructions file for Codex, OpenCode from claclark/Cottontail. It costs 701 tokens per session, scanned A, original, Apache-2.0.

Repository-specific instructions for working on the Cottontail project, a library with a Python wrapper that explores indexing structures. They tell an AI coding assistant which project documents to read and what rules to follow before editing.

In plain words
What is it for?
Use them when modifying Cottontail: read the architecture and plan documents, follow the project’s documentation conventions, and treat the repository’s verification requirements as part of the work.
Why use it?
They provide project context and safety constraints that general coding advice would not know, including the requirement to discuss and confirm changes before coding.

Instructions file for CodexOpenCode

Written for Codex and OpenCode: the file is AGENTS.md.

This is claclark/Cottontail's own configuration. It tells Codex and OpenCode how to work on Cottontail itself, so it is not a mod to install elsewhere. Copy it as a starting point and replace the rules that are about this project. Everything Cottontail configures →

Reuse

Borrowing it

Nothing to install: this file belongs to claclark/Cottontail. Take a copy, put it at the same path in your own repository, and replace the rules that are about this project with yours.

Copy the file
curl -O https://raw.githubusercontent.com/claclark/Cottontail/main/AGENTS.md
Clone the repo
git clone --depth 1 https://github.com/claclark/Cottontail

Made for: Codex, OpenCode.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

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README.md
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Your own site
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Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.

agentmods 80×15 button for Cottontail AGENTS.md

Your own site · 80×15
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Per session 701 This file is loaded in full into every session.
When invoked 701 The same file — it is already loaded in full.
Security scan A 0 findings. A grade says what 26 rules found in the file — not that it is safe.
Origin original No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.00701 $0.00701
Opus 5.5 $0.00280 $0.00280
Sonnet 5.5 $0.00140 $0.00140
Haiku 4.5 $0.00070 $0.00070

Measured yesterday against content hash ee41bf153193, method: parsed. Prices are Anthropic first-party input rates as of 2026-10-07, from the pricing page.

Security

Grade A, and why

Cottontail AGENTS.md scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured yesterday.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

AGENTS.md · 85 lines

How it starts

The opening of the file, as written. The whole thing — 85 lines — stays where its author put it; the contents beside it link to each section on GitHub.

Cottontail Agent Notes

Be a little chill. This repo started life as a research project exploring novel indexing structures. Our goal has evolved to provide a unified storage substrate for agentic search, built around annotative indexing. We want the code to be solid and usable. There is no rush. We want people to have a good experience when we release.

This file is mostly intended for an AI coding assistant working on the development of Cottontail, but of course anyone is free to look around. Annotative indexing is particularly useful for agents: it lets them turn natural-language intent into precise structural queries over code, text, JSON, and metadata, then retrieve only the local context they need. When a collection records paths, fields, symbols, spans, provenance, and transactions, the resulting evidence remains exact and inspectable.

Meadowlark provides the metadata layer that helps agents explore and understand previously unseen databases. The long-term goal is to establish a universal standard for agentic stores.

All agent documentation lives in the ai/ directory.

To explain Cottontail, annotative indexing, and their conceptual foundations to humans, use the Cottontail explainer skill.

No coding before discussion and confirmation with the user. If you ever find yourself calling something a "side car" you are probably breaking an abstraction. Stop and talk with the user.

Before Doing Any Work

Read:

  • ai/architecture.md

If it exists, also read:

  • ai/plan.md

ai/plan.md records the current planned next coding step. Use it to continue planned work instead of restarting the design discussion.

We are dogfooding apps/cgrep as a local text-search tool. Read ai/cgrep.md, and use cgrep for repository text searches when it is suitable. Other search tools are still allowed, but when cgrep cannot be used for a search, add a concise note to ai/cgrep-improvements.md explaining why.

Allow cgrep's automatic logging whenever CGREP_LOG is set. Do not unset or override it to suppress logging, including during read-only or no-code work; this logging is an expected and authorized part of repository searches.

Read the full file on GitHub · 85 lines

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. yesterday Changed · +3 lines · +39 tokens per session ee41bf153193
  2. 7d ago Changed · +5 lines · +41 tokens per session 751e04d3b14a
  3. 11d ago Changed · +4 lines · +47 tokens per session 18c8e3bde891
  4. 2mo ago First seen · 73 lines · 574 tokens per session scan A c2367b81e3dd

Subscribe to this mod's changes

Cottontail AGENTS.md is an instructions file published in the GitHub repository claclark/Cottontail (8 stars, last pushed yesterday), licensed Apache-2.0. It adds 701 tokens to every session, about $0.0028 per session on Opus 5.5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-31.

Related

Cottontail AGENTS.md compared with instructions from other repositories

Cottontail AGENTS.md next to 6 instructions from other repositories
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Cottontail AGENTS.mdclaclark/CottontailInstructions file8yesterdayApache-2.0A701Codex, OpenCode
vscode buildNext.instructions.mdmicrosoft/vscodeInstructions file195ktodayMITA9,719GitHub Copilot
next.js AGENTS.mdvercel/next.jsInstructions file143kyesterdayMITA7,461Codex, OpenCode
vscode oss-third-party-notices.instructions.mdmicrosoft/vscodeInstructions file195ktodayMITA5,649GitHub Copilot
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vscode copilot-instructions.mdmicrosoft/vscodeInstructions file195ktodayMITA3,093GitHub Copilot
vscode ai-customization.instructions.mdmicrosoft/vscodeInstructions file195ktodayMITA1,907GitHub Copilot