agentmods.dev

consent: Instructions file for Codex

AGENTS.md

consent AGENTS.md is an instructions file for Codex, OpenCode from DataBiosphere/consent. It costs 303 tokens per session, scanned A, original, BSD-3-Clause.

A repository guide for DataBiosphere/consent that tells coding agents and GitHub Copilot where to find project rules, architecture notes, and development guidance.

In plain words
What is it for?
Use it when adding or changing API routes, implementing features, fixing bugs, refactoring code, writing tests, or preparing implementation plans in this repository.
Why use it?
It reduces the need to search through scattered documentation and helps keep changes consistent with the repository’s design, security, API, testing, and data rules.

Instructions file for CodexOpenCode

Written for Codex and OpenCode: the file is AGENTS.md.

This is DataBiosphere/consent's own configuration. It tells Codex and OpenCode how to work on consent itself, so it is not a mod to install elsewhere. Copy it as a starting point and replace the rules that are about this project. Everything consent configures →

not rated 11repo changed 22d ago A scan 303 tokens original BSD-3-Clause
View source ↗ DataBiosphere/consent duos.broadinstitute.org
Reuse

Borrowing it

Nothing to install: this file belongs to DataBiosphere/consent. Take a copy, put it at the same path in your own repository, and replace the rules that are about this project with yours.

Copy the file
curl -O https://raw.githubusercontent.com/DataBiosphere/consent/develop/AGENTS.md
Clone the repo
git clone --depth 1 https://github.com/DataBiosphere/consent

Made for: Codex, OpenCode.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for consent AGENTS.md

README.md
[![agentmods](https://agentmods.dev/badge/instructions/databiosphere/consent/agents-md/github.svg)](https://agentmods.dev/instructions/databiosphere/consent/agents-md)
Your own site
<a href="https://agentmods.dev/instructions/databiosphere/consent/agents-md"><img src="https://agentmods.dev/badge/instructions/databiosphere/consent/agents-md/github.svg" alt="Measured on agentmods" height="20"></a>

Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.

agentmods 80×15 button for consent AGENTS.md

Your own site · 80×15
<a href="https://agentmods.dev/instructions/databiosphere/consent/agents-md"><img src="https://agentmods.dev/badge/instructions/databiosphere/consent/agents-md.svg" alt="Reviewed on agentmods" width="80" height="20"></a>
Per session 303 This file is loaded in full into every session.
When invoked 303 The same file — it is already loaded in full.
Security scan A 0 findings. A grade says what 26 rules found in the file — not that it is safe.
Origin original No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.00303 $0.00303
Opus 5.5 $0.00121 $0.00121
Sonnet 5.5 $0.00061 $0.00061
Haiku 4.5 $0.00030 $0.00030

Measured 22d ago against content hash 4f4de3dbe0eb, method: parsed. Prices are Anthropic first-party input rates as of 2026-10-07, from the pricing page.

Security

Grade A, and why

consent AGENTS.md scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 22d ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

AGENTS.md · 33 lines

What it actually says

Agent Guidance Index

This repository uses multiple instruction entry points.

For GitHub Copilot (GitHub UI / PR review)

  • Primary file: .github/copilot-instructions.md

For Repo Conventions and Implementation Details

  • docs/API_GUIDELINES.md
  • docs/ARCHITECTURE.md
  • docs/ONBOARDING.md
  • docs/plans/README.md
  • docs/ai/README.md (component guides; docs/ai/dar-lifecycle.md for DARs, progress reports, closeouts, elections and grant queries)
  • docs/ai/prompts/README.md
  • docs/ai/prompts/api-endpoint.md
  • docs/ai/prompts/feature-development.md
  • docs/ai/prompts/bugfix.md
  • docs/ai/prompts/refactor.md
  • CONTRIBUTING.md

Key Rules (Quick Reference)

  • Keep Resource -> Service -> DAO layering.
  • /api routes are authenticated (proxy/OAUTH-decorated); non-/api routes are unauthenticated.
  • Update src/main/resources/assets/api-docs.yaml when API contracts change.
  • Add/update tests for behavior changes.
  • Put new implementation plans and migration design docs under docs/plans/.
  • Avoid Mockito lenient stubbing (lenient()); keep tests strict-stubbing compliant.
  • Use synthetic test data only.
Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 22d ago Changed · +2 lines · +40 tokens per session 4f4de3dbe0eb
  2. 2mo ago First seen · 31 lines · 263 tokens per session scan A fda5a3fcc01b

Subscribe to this mod's changes

consent AGENTS.md is an instructions file published in the GitHub repository DataBiosphere/consent (11 stars, last pushed yesterday), licensed BSD-3-Clause. It adds 303 tokens to every session, about $0.0012 per session on Opus 5.5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-30.

Related

consent AGENTS.md compared with instructions from other repositories

consent AGENTS.md next to 6 instructions from other repositories
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consent AGENTS.mdDataBiosphere/consentInstructions file11yesterdayBSD-3-ClauseA303Codex, OpenCode
vscode buildNext.instructions.mdmicrosoft/vscodeInstructions file195kyesterdayMITA9,719GitHub Copilot
next.js AGENTS.mdvercel/next.jsInstructions file143kyesterdayMITA7,461Codex, OpenCode
langchain AGENTS.mdlangchain-ai/langchainInstructions file149kyesterdayMITA4,680Codex, OpenCode
vscode oss-third-party-notices.instructions.mdmicrosoft/vscodeInstructions file195kyesterdayMITA5,516GitHub Copilot
vscode copilot-instructions.mdmicrosoft/vscodeInstructions file195kyesterdayMITA3,093GitHub Copilot
deepseek-harness AGENTS.mddeepseek-ai/deepseek-harnessInstructions file274k2d agoMITA4,313Codex, OpenCode