Borrowing it
Nothing to install: this file belongs to dbcls/togomcp. Take a copy, put it at the same path in your own repository, and replace the rules that are about this project with yours.
curl -O https://raw.githubusercontent.com/dbcls/togomcp/main/CLAUDE.mdgit clone --depth 1 https://github.com/dbcls/togomcpWrote this? Show the measurements
A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.
[](https://agentmods.dev/instructions/dbcls/togomcp/claude-md)<a href="https://agentmods.dev/instructions/dbcls/togomcp/claude-md"><img src="https://agentmods.dev/badge/instructions/dbcls/togomcp/claude-md/github.svg" alt="Measured on agentmods" height="20"></a>Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.
<a href="https://agentmods.dev/instructions/dbcls/togomcp/claude-md"><img src="https://agentmods.dev/badge/instructions/dbcls/togomcp/claude-md.svg" alt="Reviewed on agentmods" width="80" height="20"></a>What it costs to keep this loaded
Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.
| Model | Per session | Once invoked |
|---|---|---|
| Fable 5.1 | $0.05091 | $0.05091 |
| Opus 5.5 | $0.02036 | $0.02036 |
| Sonnet 5.5 | $0.01018 | $0.01018 |
| Haiku 4.5 | $0.00509 | $0.00509 |
Grade A, and why
togomcp CLAUDE.md scanned grade A with 1 finding against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 12d ago.
A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.
Makes network callslowCapability
Not a fault in itself. Listed so you know the mod talks to something, and to what.
curl -sS -X POST https://togomcp.rdfportal.org/mcp \ How it starts
The opening of the file, as written. The whole thing — 135 lines — stays where its author put it; the contents beside it link to each section on GitHub.
TogoMCP
FastMCP server exposing the RDF Portal (SPARQL — most databases; seven run their own endpoints, see endpoints.csv) plus selected REST APIs (NCBI E-utilities, UniProt, ChEMBL, PDB, PubChem, Reactome, Rhea, MeSH, TogoID, TogoVar) to AI assistants.
Architecture
The server is assembled in main.py: a root FastMCP instance (mcp, defined in server.py) mounts four sub-servers as prefixes (plus kegg, stdio-only and opt-in):
togoid_mcpfrom togoid.py — mounted astogoidncbi_mcpfrom ncbi_tools.py — mounted asncbitogovar_mcpfrom togovar.py — mounted astogovarpubcasefinder_mcpfrom pubcasefinder.py — mounted aspubcasefinder
A REST wrapper becomes a mounted sub-server (not a flat api_tools.py search_* tool) when the external API is a cohesive multi-endpoint surface with no SPARQL counterpart in RDF Portal — the flat wrappers are keyword-search front doors to a SPARQL database (their error hint points back to run_sparql), so a DB without a SPARQL endpoint doesn't belong there. TogoVar (human genome variation: gnomAD/ToMMo/JGA/BBJ frequencies, ClinVar+MGeND significance) fits the sub-server shape, like TogoID and NCBI. PubCaseFinder is the other valid route in: it DOES have an RDF counterpart (database="pubcasefinder"), but the two tools wrap what the RDF cannot give — a computed phenotype-similarity ranking and a text-mined case-report index — so they are not keyword front doors either. Wrap only what SPARQL cannot reproduce; the rest of its REST API is SPARQList over the same RDF.
Tools registered directly on the root mcp live in rdf_portal.py (SPARQL, MIE files, endpoint resolution) and api_tools.py (REST search wrappers).
Entry points (from pyproject.toml):
togo-mcp-server— HTTP transport on0.0.0.0:8000togo-mcp-local— stdio transport (Claude Desktop)
What this file has done since we first saw it
Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.
- 12d ago Changed · +15 tokens per session 1dac8b4afeeb
- 20d ago Changed · +61 tokens per session abc7a36eab44
- 21d ago Changed · +2 lines · +519 tokens per session 907d12c29375
- 1mo ago Changed · +1 lines · +103 tokens per session aa489b2ef1fa
- 1mo ago Changed · +2 lines · +469 tokens per session ffa7f4e0990c
- 2mo ago First seen · 130 lines · 3,924 tokens per session scan A 0c75ed03d880
togomcp CLAUDE.md is an instructions file published in the GitHub repository dbcls/togomcp (20 stars, last pushed 2d ago), licensed MIT. It adds 5,091 tokens to every session, about $0.0204 per session on Opus 5.5. A static security scan graded it A with 1 finding (makes network calls). No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-30.
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