OpenELIS-Global-2 AGENTS.md

OpenELIS-Global-2 AGENTS.md is an instructions file for Codex, OpenCode from DIGI-UW/OpenELIS-Global-2. It costs 19,053 tokens per session, scanned A, original, MPL-2.0.

General instructions for AI coding agents working on OpenELIS Global 2, an open-source laboratory information management system for public-health laboratories. They define who owns file-based data transfer and provide project prerequisites such as the required Java version.

In plain words
What is it for?
Use them when working on OpenELIS laboratory workflows, file ingestion, bridge integration, result processing, or setup and compatibility checks.
Why use it?
They prevent agents from putting functionality in the wrong part of the system or violating the stated ownership model. They also provide essential project context before code changes begin.

Instructions file for CodexOpenCode

Written for Codex and OpenCode: the file is AGENTS.md. Also seen: reads .claude/ paths; mentions CLAUDE.md; mentions Claude Code.

Not installable on its own: it reads a path above its own folder, which only exists inside its repository. The line is import messages from "../../../languages/en.json";.

Install

Getting it into your agent

There is no command for this one: it runs only inside a plugin, and the catalogue could not identify which plugin ships it. The source is linked below.

Made for: Codex, OpenCode.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for OpenELIS-Global-2 AGENTS.md

README.md
[![agentmods](https://agentmods.dev/badge/instructions/digi-uw/openelis-global-2/agents-md.svg)](https://agentmods.dev/instructions/digi-uw/openelis-global-2/agents-md)
Your own site
<a href="https://agentmods.dev/instructions/digi-uw/openelis-global-2/agents-md"><img src="https://agentmods.dev/badge/instructions/digi-uw/openelis-global-2/agents-md.svg" alt="Measured on agentmods" height="20"></a>
Per session 19,053 This file is loaded in full into every session.
When invoked 19,053 The same file — it is already loaded in full.
Security scan A 0 findings. Scan, not verified.
Origin original No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.19053 $0.19053
Opus 5 $0.09527 $0.09527
Sonnet 5 $0.03811 $0.03811
Haiku 4.5 $0.01905 $0.01905

Measured 6d ago against content hash 6376eab7a45c, method: parsed. Prices are Anthropic first-party input rates as of 2026-09-06, from the pricing page.

Security

Grade A, and why

OpenELIS-Global-2 AGENTS.md scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 6d ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

AGENTS.md · 2,335 lines

How it starts

The opening of the file, as written. The whole thing — 2,335 lines — stays where its author put it; the contents beside it link to each section on GitHub.

AGENTS.md - README for AI Coding Agents

FILE Ownership Model (014 Remediation)

For FILE-based analyzer workflows in OpenELIS Global 2:

  • Bridge is the runtime owner of directory watching/polling and file transport.
  • OpenELIS owns configuration, bridge registration, direct ingestion endpoint, and result processing.
  • No OpenELIS app-side FILE poller is implemented in this branch. If a fallback poller is added later, it must remain disabled by default unless explicitly enabled.

When guidance conflicts, this ownership model takes precedence for remediation work in feature 014.

Purpose: This file provides comprehensive project context for ALL AI coding agents (Claude, Cursor, Copilot, Jules, Aider, etc.). It contains everything an AI agent needs to know to work effectively on OpenELIS Global 2.

For Humans: See README.md for project overview and CONTRIBUTING.md for contribution guidelines.


Project Identity

What is OpenELIS Global 2?

OpenELIS Global is an open-source Laboratory Information Management System (LIMS) designed for public health laboratories in resource-limited settings. It manages the complete laboratory workflow from sample collection to result reporting, serving 30+ countries worldwide.

Key Characteristics:

  • Healthcare Mission-Critical: Used for HIV/AIDS testing, TB diagnostics, malaria surveillance, COVID-19 testing
  • Regulatory Compliance: Meets SLIPTA (Stepwise Laboratory Quality Improvement Process Towards Accreditation) and ISO 15189 standards
  • Multilingual: Supports en, fr, ar, es, hi, pt, sw (English, French, Arabic, Spanish, Hindi, Portuguese, Swahili)
  • Interoperability: FHIR R4 + IHE standards for integration with national health information exchanges
  • Specification-Driven Development: Uses GitHub SpecKit for rigorous feature development workflow

Governance:

  • Constitution Authority: .specify/memory/constitution.md (v1.8.1) is the authoritative governance document
  • All code changes MUST comply with constitutional principles
  • Constitution supersedes all other documentation in case of conflict

Read the full file on GitHub · 2,335 lines

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 6d ago First seen · 2,335 lines · 19,053 tokens per session scan A 6376eab7a45c

Subscribe to this mod's changes

OpenELIS-Global-2 AGENTS.md is an instructions file published in the GitHub repository DIGI-UW/OpenELIS-Global-2 (251 stars, last pushed yesterday), licensed MPL-2.0. It adds 19,053 tokens to every session, about $0.0953 per session on Opus 5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-30.