codomyrmex: Instructions file for Claude Code

CLAUDE.md

codomyrmex CLAUDE.md is an instructions file for Claude Code from docxology/codomyrmex. It costs 4,596 tokens per session, scanned A, original, MIT.

Repository instructions for Codomyrmex, including setup, dependency installation, submodules, builds, and tests. A repository instruction file tells a coding agent how to work with that project.

In plain words
What is it for?
Use it when installing dependencies, initializing submodules, selecting optional modules, running tests, or developing Codomyrmex.
Why use it?
It reduces setup mistakes and records project-specific commands and restrictions.

Instructions file for Claude Code

Written for Claude Code: the file is CLAUDE.md. Also seen: reads .claude/ paths; mentions CLAUDE.md; mentions subagents.

This is docxology/codomyrmex's own configuration. It tells Claude Code how to work on codomyrmex itself, so it is not a mod to install elsewhere. Copy it as a starting point and replace the rules that are about this project. Everything codomyrmex configures →

Reuse

Borrowing it

Nothing to install: this file belongs to docxology/codomyrmex. Take a copy, put it at the same path in your own repository, and replace the rules that are about this project with yours.

Copy the file
curl -O https://raw.githubusercontent.com/docxology/codomyrmex/main/CLAUDE.md
Clone the repo
git clone --depth 1 https://github.com/docxology/codomyrmex

Made for: Claude Code.

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Per session 4,596 This file is loaded in full into every session.
When invoked 4,596 The same file — it is already loaded in full.
Security scan A 0 findings. A grade says what 26 rules found in the file — not that it is safe.
Origin original No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.04596 $0.04596
Opus 5.5 $0.01838 $0.01838
Sonnet 5.5 $0.00919 $0.00919
Haiku 4.5 $0.00460 $0.00460

Measured 15d ago against content hash 8c7fad4a89f8, method: parsed. Prices are Anthropic first-party input rates as of 2026-10-07, from the pricing page.

Security

Grade A, and why

codomyrmex CLAUDE.md scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 15d ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

CLAUDE.md · 397 lines

How it starts

The opening of the file, as written. The whole thing — 397 lines — stays where its author put it; the contents beside it link to each section on GitHub.

CLAUDE.md

Version: v1.3.0 | Last Updated: October 2026

This file provides guidance to Claude Code (claude.ai/code) when working with code in this repository.

Build & Development Commands

# Install dependencies (uv recommended)
uv sync

# Set up git submodules (run once after cloning, or after submodule updates)
# Initializes all 5 submodules and installs hermes/evolution Python deps
bash scripts/setup_submodules.sh
# Or via Makefile:
make submodules   # submodules only
make setup        # install + submodules together

# NOTE: Never run `uv sync` inside src/codomyrmex/agents/hermes/evolution/ —
# its `darwinian` optional extra requires a non-PyPI package and will fail locking.
# The setup script handles this correctly via `uv venv --seed` + pip.

# Install with optional module dependencies
uv sync --extra <module-name>    # e.g., uv sync --extra spatial
uv sync --all-extras             # Install all optional dependencies

# Run all tests (no coverage — fast default)
uv run pytest

# Run tests with coverage and the 60% gate (same idea as `make test`).
# Makefile exports HYPOTHESIS_NO_NPY=1; for raw pytest, prefix the command so Hypothesis
# initializes before conftest (see tests/RUNNING_TESTS.md).
HYPOTHESIS_NO_NPY=1 uv run pytest --cov=src/codomyrmex --cov-report=html --cov-fail-under=60

# Pre-tag / release checklist: ruff + ty + full test tree with 60% coverage floor
make verify-release

# Run specific test file or module
uv run pytest tests/unit/<module>/test_<module>.py
uv run pytest -k "test_name"     # Run tests matching pattern

# Code formatting and linting
uv run ruff format src/
uv run ruff check src/
uv run ty check src/

# CLI usage
codomyrmex --help
codomyrmex check                 # Verify environment setup
codomyrmex modules               # List available modules
codomyrmex status                # System status dashboard
codomyrmex shell                 # Interactive shell
codomyrmex workflow list         # List workflows
codomyrmex project list          # List projects
codomyrmex ai generate           # AI code generation
codomyrmex analyze <path>        # Code analysis
codomyrmex build <path>          # Project build
codomyrmex test <module>         # Run module tests
codomyrmex fpf fetch <url>       # FPF fetch/parse/export
codomyrmex skills list           # Skill management

Read the full file on GitHub · 397 lines

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 15d ago Changed · +15 lines · +26 tokens per session 8c7fad4a89f8
  2. 1mo ago First seen · 382 lines · 4,570 tokens per session scan A 0f91e1e767cb

Subscribe to this mod's changes

codomyrmex CLAUDE.md is an instructions file published in the GitHub repository docxology/codomyrmex (11 stars, last pushed today), licensed MIT. It adds 4,596 tokens to every session, about $0.0184 per session on Opus 5.5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-30.

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