zotero-obsidian-codex-workflow: Instructions file for Codex

AGENTS.md

zotero-obsidian-codex-workflow AGENTS.md is an instructions file for Codex, OpenCode from guyumengyue/zotero-obsidian-codex-workflow. It costs 484 tokens per session, scanned A, original, MIT.

Repository instructions for a Zotero–Obsidian–Codex literature workflow. Zotero manages references, Obsidian stores linked notes, and the instructions explain how to initialize and use the public template safely.

In plain words
What is it for?
Checking or configuring the required research tools, initializing the template, moving into the research workspace, processing literature, and maintaining public documentation.
Why use it?
They guide setup and keep private papers, notes, exports, caches, and workspace files out of the shared repository.

Instructions file for CodexOpenCode

Written for Codex and OpenCode: the file is AGENTS.md. Also seen: mentions AGENTS.md; mentions Codex; $skill-name invocation.

This is guyumengyue/zotero-obsidian-codex-workflow's own configuration. It tells Codex and OpenCode how to work on zotero-obsidian-codex-workflow itself, so it is not a mod to install elsewhere. Copy it as a starting point and replace the rules that are about this project. Everything zotero-obsidian-codex-workflow configures →

Reuse

Borrowing it

Nothing to install: this file belongs to guyumengyue/zotero-obsidian-codex-workflow. Take a copy, put it at the same path in your own repository, and replace the rules that are about this project with yours.

Copy the file
curl -O https://raw.githubusercontent.com/guyumengyue/zotero-obsidian-codex-workflow/main/AGENTS.md
Clone the repo
git clone --depth 1 https://github.com/guyumengyue/zotero-obsidian-codex-workflow

Made for: Codex, OpenCode.

Wrote this? Show the measurements

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README.md
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Per session 484 This file is loaded in full into every session.
When invoked 484 The same file — it is already loaded in full.
Security scan A 0 findings. A grade says what 26 rules found in the file — not that it is safe.
Origin original No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.00484 $0.00484
Opus 5 $0.00242 $0.00242
Sonnet 5 $0.00097 $0.00097
Haiku 4.5 $0.00048 $0.00048

Measured 9d ago against content hash ae481bc918d7, method: parsed. Prices are Anthropic first-party input rates as of 2026-09-09, from the pricing page.

Security

Grade A, and why

zotero-obsidian-codex-workflow AGENTS.md scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 9d ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

AGENTS.md · 40 lines

What it actually says

角色

[你负责在仓库根目录帮助用户初始化和维护这套 Zotero-Obsidian-Codex 文献工作流模板。]


工作边界

  • 仓库根目录是 Obsidian vault 根目录。
  • Research vault/ 是日常文献处理工作区,内部目录名固定,不要重命名。
  • 优先使用统一入口 skill:$zotero-obsidian-codex-workflow
  • 当用户要做 clone 后初始化、迁移、分享、校验、轻量微调时,使用 $zotero-obsidian-codex-setup Skill。
  • 当用户要读文献、补笔记、写综述、设计实验时,不要停留在仓库根目录;切换到 Research vault/,遵守其中的 AGENTS.md$literature-processor
  • 如果当前位于仓库根目录,且 .obsidian/plugins/obsidian-zotero-desktop-connector/data.json 不存在,优先执行 repo 内的 setup 检查与初始化流程,再继续其他工作。

初始化目标

  1. 检查或指导安装:
    • Obsidian
    • Zotero
    • Better BibTeX for Zotero
    • Obsidian 社区插件 Dataview
    • Obsidian 社区插件 Zotero Integration
  2. 通过仓库内 setup 资源写入:
    • .obsidian/plugins/obsidian-zotero-desktop-connector/data.json
  3. 保持默认导出目标:
    • Research vault/references.bib/library.bib
  4. 初始化完成后,把后续工作交接到:
    • Research vault/

公开模板护栏

  • 这是公开模板仓库,不要把真实 PDF、真实文献笔记、私有 BibTeX 导出、缓存、workspace 状态或测试残留加入版本控制,除非用户明确要做私有本地修改。
  • 不要把 Obsidian 社区插件二进制打包进仓库。
  • 对外路径说明一律用相对路径,不写本机绝对路径。
Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 9d ago First seen · 40 lines · 484 tokens per session scan A ae481bc918d7

Subscribe to this mod's changes

zotero-obsidian-codex-workflow AGENTS.md is an instructions file published in the GitHub repository guyumengyue/zotero-obsidian-codex-workflow (12 stars, last pushed 3mo ago), licensed MIT. It adds 484 tokens to every session, about $0.0024 per session on Opus 5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-30.

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