Getting it into your agent
One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.
npx agentmods add instructions/holobiomicslab/asb-skill-collections/claude-mdgit clone --depth 1 https://github.com/HolobiomicsLab/asb-skill-collectionsWhat it costs to keep this loaded
Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.
| Model | Per session | Once invoked |
|---|---|---|
| Fable 5 | $0.00343 | $0.00343 |
| Opus 5 | $0.00171 | $0.00171 |
| Sonnet 5 | $0.00069 | $0.00069 |
| Haiku 4.5 | $0.00034 | $0.00034 |
Grade A, and why
asb-skill-collections CLAUDE.md scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured yesterday.
A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.
Nothing flagged
None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.
What it actually says
CLAUDE.md — ASB Metabolomics skills
This repo publishes the ASB Metabolomics Skill Collection
(collections/metabolomics/v2/): 5,859 evidence-grounded skills + 909 tools for
computational LC-MS/MS metabolomics.
Install (Claude Code plugin)
/plugin marketplace add HolobiomicsLab/asb-skill-collections
/plugin install metabolomics@asb-skill-collections
Two skills are advertised; the corpus ships as data at
collections/metabolomics/v2/leaves/<slug>/SKILL.md and is read on demand. Start at
the asb-metabolomics meta-skill (guide + license-tier governance), which hands off
to skills/_router/SKILL.md for routing.
Use
Search → apply → ground. Full protocol in AGENTS.md and
collections/metabolomics/v2/USAGE.md.
- Find a skill via
collections/metabolomics/v2/skills_index.json(EDAM IRI / tool name / keyword) ortools_index.json. - Ground a skill against its source paper with the Perspicacité binder:
python scripts/perspicacite_kb_bind.py query --collection collections/metabolomics/v2 --skill <slug> --question "..."(skill→KB map inkb_bundle.json; tierspaper/si/repo).
The public release is metabolomics only; other collections/ domains are
staged/internal.
What this file has done since we first saw it
Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.
- yesterday First seen · 32 lines · 343 tokens per session scan A 88ede7084fc4
asb-skill-collections CLAUDE.md is an instructions file published in the GitHub repository HolobiomicsLab/asb-skill-collections (15 stars, last pushed 10d ago), licensed Apache-2.0. It adds 343 tokens to every session, about $0.0017 per session on Opus 5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-30.
Other instructions, from other repositories
cryocore AGENTS.md
Instructions for BioSymphony/cryocore, covering biosymphony cryocore agent guide, operating rules, ownership boundary, dev commands and key patterns and conventions.
bioinformatics-agent-skills AGENTS.md
Instructions for YuliaNuzhnenko/bioinformatics-agent-skills, covering agent integration & specification guide 🤖, 📌 supported agent host architectures, 🧪 skill frontmatter specification and 🔒 security & sandboxing.
bioinformatics-agent-skills CLAUDE.md
Instructions for YuliaNuzhnenko/bioinformatics-agent-skills, covering claude code project guidelines, project overview, development & validation commands and skill conventions.
structure-factory AGENTS.md
Instructions for BioSymphony/structure-factory, covering biosymphony structure factory agent guide, mission, how to drive a mission, compute available and orchestrators supported.
mgi-link CLAUDE.md
Claude Code instructions for berntpopp/mgi-link, covering claude.md, tl;dr, common commands and layout.
gnomad-genetics-mcp-server CLAUDE.md
Claude Code instructions for cyanheads/gnomad-genetics-mcp-server, covering developer protocol, core rules, patterns, server config (src/config/server-config.ts) and server identity and instructions.