limbic: Instructions file for Claude Code

CLAUDE.md

limbic CLAUDE.md is an instructions file for Claude Code from houshuang/limbic. It costs 1,933 tokens per session, scanned A, original, MIT.

Project instructions for Limbic, a data-curation toolkit for embeddings, search, change proposals, and verification. Embeddings are numerical representations of text used to compare meaning.

In plain words
What is it for?
Use them when working on Limbic data processing, especially whitening focused corpora, generalizing changing numbers, and choosing clustering thresholds.
Why use it?
They provide rules intended to make similarity search and clustering more reliable for focused or number-heavy text collections.

Instructions file for Claude Code

Written for Claude Code: the file is CLAUDE.md. Also seen: positional $N argument.

This is houshuang/limbic's own configuration. It tells Claude Code how to work on limbic itself, so it is not a mod to install elsewhere. Copy it as a starting point and replace the rules that are about this project. Everything limbic configures →

Reuse

Borrowing it

Nothing to install: this file belongs to houshuang/limbic. Take a copy, put it at the same path in your own repository, and replace the rules that are about this project with yours.

Copy the file
curl -O https://raw.githubusercontent.com/houshuang/limbic/main/CLAUDE.md
Clone the repo
git clone --depth 1 https://github.com/houshuang/limbic

Made for: Claude Code.

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README.md
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Per session 1,933 This file is loaded in full into every session.
When invoked 1,933 The same file — it is already loaded in full.
Security scan A 0 findings. A grade says what 26 rules found in the file — not that it is safe.
Origin original No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.01933 $0.01933
Opus 5 $0.00966 $0.00966
Sonnet 5 $0.00387 $0.00387
Haiku 4.5 $0.00193 $0.00193

Measured 6d ago against content hash 1d57fd6ffad7, method: parsed. Prices are Anthropic first-party input rates as of 2026-09-06, from the pricing page.

Security

Grade A, and why

limbic CLAUDE.md scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 6d ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

CLAUDE.md · 170 lines

How it starts

The opening of the file, as written. The whole thing — 170 lines — stays where its author put it; the contents beside it link to each section on GitHub.

Limbic — AI Agent Guide

Data curation toolkit: embeddings, search, proposals, and AI-assisted verification.

Three packages: limbic.amygdala (find patterns), limbic.hippocampus (manage changes), limbic.cerebellum (verify correctness).

Rules of Thumb

Always whiten domain-focused corpora

If the corpus is about one domain (education, medicine, politics, performing arts), always use whitening. Without it, raw embeddings compress into a narrow similarity band (0.7–0.9) and downstream clustering/novelty/search all degrade.

model = EmbeddingModel(whiten_epsilon=0.1)
model.fit_whitening(corpus_texts)

Skip whitening only when your corpus spans many unrelated domains.

Always genericize number-heavy text

If texts contain variable amounts, dates, section references, or place names around the same argument, use genericize=True. This prevents "allocate 50M" and "allocate 200M" from being treated as different arguments.

model = EmbeddingModel(genericize=True, whiten_epsilon=0.1)

Clustering thresholds depend on whitening

Corpus state Threshold Why
Raw embeddings, diverse corpus 0.70–0.75 Embeddings already spread
Raw embeddings, domain-focused 0.90+ Narrow cone, everything looks similar
Whitened, homogeneous text (extracted claims) 0.85 Very similar surface form
Whitened, diverse authorship (op-eds, responses) 0.70–0.75 Different writers phrase same argument differently

If your largest cluster has 50+ members, your threshold is too low or you need whitening. Start at 0.75 post-whitening, then sweep [0.70, 0.75, 0.80, 0.85] on your data. Validated on 27K education claims (0.85), 6.5K political proposals (0.75–0.80), and 1.7K op-ed claims (0.75).

Always validate thresholds before shipping

An initial threshold (even 0.85) can produce false positives in your specific domain. LLM-validate a sample of 50–100 pairs at your chosen threshold before using results downstream. Gemini Flash validation costs ~$0.001/pair.

Read the full file on GitHub · 170 lines

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 6d ago First seen · 170 lines · 1,933 tokens per session scan A 1d57fd6ffad7

Subscribe to this mod's changes

limbic CLAUDE.md is an instructions file published in the GitHub repository houshuang/limbic (3 stars, last pushed 2d ago), licensed MIT. It adds 1,933 tokens to every session, about $0.0097 per session on Opus 5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-31.

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