Getting it into your agent
One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.
npx agentmods add instructions/humanbean17/jrag/claude-mdgit clone --depth 1 https://github.com/HumanBean17/jragWhat it costs to keep this loaded
Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.
| Model | Per session | Once invoked |
|---|---|---|
| Fable 5 | $0.00767 | $0.00767 |
| Opus 5 | $0.00383 | $0.00383 |
| Sonnet 5 | $0.00153 | $0.00153 |
| Haiku 4.5 | $0.00077 | $0.00077 |
Grade C, and why
jrag CLAUDE.md scanned grade C with 1 finding against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 3d ago.
A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.
Recursive force deletehighDestructive command
rm -rf with a variable or a broad path is one typo away from removing the wrong tree.
`rm -rf tests/*/.java-codebase-rag tests/*/.java-codebase-rag.{yml,hosts}` How it starts
The opening of the file, as written. The whole thing — 58 lines — stays where its author put it; the contents beside it link to each section on GitHub.
jrag
Python environment
Use .venv/bin/python and .venv/bin/pip (repo root) for all Python commands.
Invoke the .venv/bin executables directly — never system python/pip.
Editable install only. If jrag/java-codebase-rag serve stale behavior
while pytest passes, run .venv/bin/pip install -e ".[dev]" — don't report it.
tests/conftest.py enforces this.
Tests
- Erase stale manual indexes first — they hijack project-root discovery:
rm -rf tests/*/.java-codebase-rag tests/*/.java-codebase-rag.{yml,hosts} - Tests build their own fresh index in a temp dir; never commit one under
tests/(.gitignoreun-ignores it there). - The full suite is slow. Run only the subset relevant to your change during development; run the full suite once, at the end of the task.
- On-disk
.java-codebase-rag*names (index dir, project YAML, hosts) andJAVA_CODEBASE_RAG_*env vars are intentionally retained for backward compatibility — do not "fix" them.
Docs
Most files in docs/ are operator-facing. The two flagged below are internal (contributor) docs.
Operator docs
docs/CONFIGURATION.md— env vars, project YAML, ontology, brownfield overrides, ignore patterns.docs/JRAG-CLI.md— operator CLI playbook (workflows, exit codes, env alignment).docs/MIGRATION.md—java-codebase-rag→jragrename map (commands, package, untouched on-disk state).docs/AGENT-GUIDE.md— agent-facing MCP operating manual (copy-paste intoAGENTS.md/CLAUDE.md).docs/EDGE-NAVIGATION.md— MCP-traversable edges, directions, dot-key composition.docs/MANUAL-VERIFICATION-CHECKLIST.md— 7-phase post-index verification.docs/CODEBASE_REQUIREMENTS.md— assumptions about the target Java repo.docs/PRODUCT-VISION.md— long-term product direction.docs/paper/paper.pdf— architecture report (rationale, GPS metaphor, ontology).
Internal docs (contributors working on this repo)
docs/DESIGN.md— WHAT/WHY: core principles, what's indexed, surfaces, non-goals.docs/ARCHITECTURE.md— HOW: pipeline, module map, write/read paths, stores, extension points.
What this file has done since we first saw it
Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.
- 3d ago First seen · 58 lines · 767 tokens per session scan C 673a08304bd6
jrag CLAUDE.md is an instructions file published in the GitHub repository HumanBean17/jrag (9 stars, last pushed 8d ago), licensed MIT. It adds 767 tokens to every session, about $0.0038 per session on Opus 5. A static security scan graded it C with 1 finding (recursive force delete). No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-31.
Other instructions, from other repositories
skills CLAUDE.md
Instructions for jsmastery-pro/skills, covering project: engineering workflow skills, conventions every skill follows, layout and skills.
dxkit CLAUDE.md
Instructions for vyuh-labs/dxkit, covering claude.md — dxkit development rules, architecture rules, 1. tool invocation goes through the registry, 2. never duplicate tool invocation logic and 3. language facts come from detect.ts.
hydraflow AGENTS.md
Instructions for T-rav/hydraflow, covering agents.md, agent runtimes, supported runtimes, what the runtime must support and output marker stability.
hydraflow CLAUDE.md
Instructions for T-rav/hydraflow, covering claude.md, quick rules (always apply), knowledge lookup, wiki topic index and workflow skills (adr-0044 p8/p10).
lead-dev-os CLAUDE.md
Instructions for CaptainMe-AI/lead-dev-os, covering claude.md, project, terminology, plugin architecture and repository structure.
shanraisshan CLAUDE.md
Claude Code instructions for shanraisshan/shanraisshan, covering claude.md, what this repo is, key files, badge formatting rules and reddit views (badges at >= 50k).