project-bourne: Instructions file for Codex

AGENTS.md

project-bourne AGENTS.md is an instructions file for Codex, OpenCode from KozakHou/project-bourne. It costs 3,694 tokens per session, scanned A, original, Apache-2.0.

A set of agent instructions for Project Bourne, a system that records how scientific and engineering experiments were produced so results can be traced and reproduced.

In plain words
What is it for?
Guiding agents working on experiment provenance, reproducibility, traceability, and durable records across many programming languages and scientific tools.
Why use it?
It preserves an experiment's history beyond the code or tools used, making it easier to understand and repeat past results.

Instructions file for CodexOpenCode

Written for Codex and OpenCode: the file is AGENTS.md. Also seen: mentions Codex.

This is KozakHou/project-bourne's own configuration. It tells Codex and OpenCode how to work on project-bourne itself, so it is not a mod to install elsewhere. Copy it as a starting point and replace the rules that are about this project. Everything project-bourne configures →

Reuse

Borrowing it

Nothing to install: this file belongs to KozakHou/project-bourne. Take a copy, put it at the same path in your own repository, and replace the rules that are about this project with yours.

Copy the file
curl -O https://raw.githubusercontent.com/KozakHou/project-bourne/main/AGENTS.md
Clone the repo
git clone --depth 1 https://github.com/KozakHou/project-bourne

Made for: Codex, OpenCode.

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When invoked 3,694 The same file — it is already loaded in full.
Security scan A 0 findings. A grade says what 26 rules found in the file — not that it is safe.
Origin original No closer match found in the catalogue.
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ModelPer sessionOnce invoked
Fable 5.1 $0.03694 $0.03694
Opus 5.5 $0.01478 $0.01478
Sonnet 5.5 $0.00739 $0.00739
Haiku 4.5 $0.00369 $0.00369

Measured 2mo ago against content hash 55409d8910f4, method: parsed. Prices are Anthropic first-party input rates as of 2026-10-07, from the pricing page.

Security

Grade A, and why

project-bourne AGENTS.md scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 2mo ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

AGENTS.md · 907 lines

How it starts

The opening of the file, as written. The whole thing — 907 lines — stays where its author put it; the contents beside it link to each section on GitHub.

Project Bourne — Agent Instructions

Project Identity

Project: Project Bourne Python distribution: bourneprov Python package: bourneprov CLI: bourne

Tagline:

Every experiment has a history.

Short description:

Universal experiment provenance and reproducibility for science and engineering.

Project Bourne is a general-purpose scientific experiment provenance, reproducibility, traceability, and durable record-keeping system.

Its purpose is to preserve how scientific and engineering results came to exist.

The core abstraction is the experiment, not the programming language, framework, solver, or AI agent.


Core Product Principle

Universal by default, domain-aware when available.

Bourne core must work without knowing whether an experiment uses:

  • Python
  • JAX
  • PyTorch
  • TensorFlow
  • Julia
  • MATLAB
  • R
  • C
  • C++
  • CUDA
  • Fortran
  • MPI
  • COMSOL
  • OpenFOAM
  • LAMMPS
  • GROMACS
  • proprietary scientific software
  • shell scripts
  • arbitrary executables

Framework- and domain-specific knowledge belongs in optional collectors, adapters, integrations, or later verification modules.


Mental Model

Git answers:

How did this code come to exist?

Bourne answers:

How did this scientific result come to exist?

A result may depend on:

  • source code
  • Git state
  • data
  • configuration
  • parameters
  • environment
  • dependencies
  • compiler/runtime
  • hardware
  • operating system
  • execution command
  • random state
  • upstream experiments
  • generated artefacts
  • human actions
  • agent actions

Bourne exists to preserve that history.


Non-Negotiable Rules

  1. Never make Bourne core dependent on a specific ML framework.

  2. Arbitrary commands and executables are first-class experiments.

  3. Basic provenance capture must not require users to modify their scientific source code.

  4. A failed experiment is still an experiment and must be recorded.

  5. Provenance correctness takes priority over UI polish.

  6. Bourne must remain useful without AI agents.

Read the full file on GitHub · 907 lines

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 2mo ago First seen · 907 lines · 3,694 tokens per session scan A 55409d8910f4

Subscribe to this mod's changes

project-bourne AGENTS.md is an instructions file published in the GitHub repository KozakHou/project-bourne (0 stars, last pushed 2mo ago), licensed Apache-2.0. It adds 3,694 tokens to every session, about $0.0148 per session on Opus 5.5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-31.

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