jaxonomy: Instructions file for Codex

AGENTS.md

jaxonomy AGENTS.md is an instructions file for Codex, OpenCode from machinavitalis/jaxonomy. It costs 2,244 tokens per session, scanned A, original, MIT.

A repository guide for Jaxonomy, including where coding agents should start, which documents describe its architecture and conventions, and how to test changes. Jaxonomy is a software project with a public API that other programs can use.

In plain words
What is it for?
Use it when modifying Jaxonomy, adding code, using its public API, checking established design decisions, or following its test conventions.
Why use it?
It prevents agents from copying outdated instructions or changing code without first reading the project's navigation, design decisions, and patterns.

Instructions file for CodexOpenCode

Written for Codex and OpenCode: the file is AGENTS.md. Also seen: reads .claude/ paths; mentions CLAUDE.md; mentions Claude Code.

This is machinavitalis/jaxonomy's own configuration. It tells Codex and OpenCode how to work on jaxonomy itself, so it is not a mod to install elsewhere. Copy it as a starting point and replace the rules that are about this project. Everything jaxonomy configures →

Reuse

Borrowing it

Nothing to install: this file belongs to machinavitalis/jaxonomy. Take a copy, put it at the same path in your own repository, and replace the rules that are about this project with yours.

Copy the file
curl -O https://raw.githubusercontent.com/machinavitalis/jaxonomy/main/AGENTS.md
Clone the repo
git clone --depth 1 https://github.com/machinavitalis/jaxonomy

Made for: Codex, OpenCode.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

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README.md
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Your own site
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Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.

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Per session 2,244 This file is loaded in full into every session.
When invoked 2,244 The same file — it is already loaded in full.
Security scan A 0 findings. A grade says what 26 rules found in the file — not that it is safe.
Origin original No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.02244 $0.02244
Opus 5.5 $0.00898 $0.00898
Sonnet 5.5 $0.00449 $0.00449
Haiku 4.5 $0.00224 $0.00224

Measured 1mo ago against content hash a3b7579f8f6a, method: parsed. Prices are Anthropic first-party input rates as of 2026-10-07, from the pricing page.

Security

Grade A, and why

jaxonomy AGENTS.md scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 1mo ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

AGENTS.md · 147 lines

How it starts

The opening of the file, as written. The whole thing — 147 lines — stays where its author put it; the contents beside it link to each section on GitHub.

AGENTS.md — Jaxonomy

Agent bootstrap and operational notes, for any coding agent (Claude Code, Codex, Gemini, Cursor, …) and human contributors. This is the canonical, tool-neutral entry file; CLAUDE.md, GEMINI.md, .github/copilot-instructions.md, and CONVENTIONS.md are symlinks to it, and .cursor/rules/ points here (see "Entry points" at the end).

Two doors, depending on what you're here to do:

  • Modifying / adding code in Jaxonomy → follow the read order below, starting at AGENTS/README.md. Full project orientation lives in AGENTS/; come back here for the things that specifically save agent time.
  • Using Jaxonomy's public API in your own code (authoring a tutorial, building a demo, writing a downstream library) → read SKILL.md, the consumer operating manual, instead.

Read first

  1. AGENTS/README.md — navigation + which AGENTS file to use when.
  2. AGENTS/CONTEXT.md — what Jaxonomy is, design philosophy, key abstractions.
  3. AGENTS/PATTERNS.md — coding conventions (npa vs jnp, LeafSystem callback signatures, NamedTuple state, test patterns, naming).
  4. AGENTS/DECISIONS.md — ADRs; check before re-litigating a settled choice.
  5. AGENTS/RULES.md — operating principles, shippable-surface rule, claims/gaps discipline, self-improvement loop.

For a pure usage session (author a tutorial, build a demo, exercise the public API), SKILL.md is the better starting point.

Operating discipline (pointers, not a second copy)

The substance lives in two files; this bootstrap defers to them rather than restating them:

  • AGENTS/RULES.md — the four operating principles (think before coding; simplest implementation that fits; surgical changes only; define success then loop), the shippable-surface rule + adversarial-review pass, claims/gaps discipline, and the self-improvement loop. Read it once.
  • AGENTS/README.md — session protocol, branching/commits, scope discipline, and the autonomy/escalation list.

Read the full file on GitHub · 147 lines

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 1mo ago First seen · 147 lines · 2,244 tokens per session scan A a3b7579f8f6a

Subscribe to this mod's changes

jaxonomy AGENTS.md is an instructions file published in the GitHub repository machinavitalis/jaxonomy (21 stars, last pushed 2mo ago), licensed MIT. It adds 2,244 tokens to every session, about $0.0090 per session on Opus 5.5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-30.

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