atlassian-mcp: Instructions file for Codex

AGENTS.md

atlassian-mcp AGENTS.md is an instructions file for Codex, OpenCode from matutezam/atlassian-mcp. It costs 1,497 tokens per session, scanned A, original, from a forked repository, MIT.

Repository instructions for an Atlassian MCP project, covering its layout, design, development process, and publication safety.

In plain words
What is it for?
Use them when developing or testing the project, including its Jira and Confluence integrations.
Why use it?
They help the coding agent work consistently with the project's rules and avoid unsafe releases.

Instructions file for CodexOpenCode

Written for Codex and OpenCode: the file is AGENTS.md. Also seen: mentions Codex.

This is matutezam/atlassian-mcp's own configuration. It tells Codex and OpenCode how to work on atlassian-mcp itself, so it is not a mod to install elsewhere. Copy it as a starting point and replace the rules that are about this project. Everything atlassian-mcp configures →

Reuse

Borrowing it

Nothing to install: this file belongs to matutezam/atlassian-mcp. Take a copy, put it at the same path in your own repository, and replace the rules that are about this project with yours.

Copy the file
curl -O https://raw.githubusercontent.com/matutezam/atlassian-mcp/main/AGENTS.md
Clone the repo
git clone --depth 1 https://github.com/matutezam/atlassian-mcp

Made for: Codex, OpenCode.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for atlassian-mcp AGENTS.md

README.md
[![agentmods](https://agentmods.dev/badge/instructions/matutezam/atlassian-mcp/agents-md.svg)](https://agentmods.dev/instructions/matutezam/atlassian-mcp/agents-md)
Your own site
<a href="https://agentmods.dev/instructions/matutezam/atlassian-mcp/agents-md"><img src="https://agentmods.dev/badge/instructions/matutezam/atlassian-mcp/agents-md.svg" alt="Measured on agentmods" height="20"></a>
Per session 1,497 This file is loaded in full into every session.
When invoked 1,497 The same file — it is already loaded in full.
Security scan A 0 findings. A grade says what 26 rules found in the file — not that it is safe.
Origin fork From a forked repository.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.01497 $0.01497
Opus 5 $0.00749 $0.00749
Sonnet 5 $0.00299 $0.00299
Haiku 4.5 $0.00150 $0.00150

Measured 6d ago against content hash 565561664c16, method: parsed. Prices are Anthropic first-party input rates as of 2026-09-07, from the pricing page.

Security

Grade A, and why

atlassian-mcp AGENTS.md scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 6d ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

AGENTS.md · 111 lines

How it starts

The opening of the file, as written. The whole thing — 111 lines — stays where its author put it; the contents beside it link to each section on GitHub.

Repository Instructions

This file is the public baseline for the repository.

If AGENTS.local.md exists locally, read it as well and treat it as environment-specific guidance that augments this file. AGENTS.local.md must stay local and must not be committed.

Repository map

Path Purpose
src/mcp_atlassian/ Library source (Python ≥ 3.10)
├─ jira/ Jira client + 21 mixins for issues, search, transitions, SLA, metrics, and related APIs
├─ confluence/ Confluence client + 8 mixins for pages, search, analytics, comments, and related APIs
├─ models/ Pydantic v2 data models (ApiModel base)
├─ servers/ FastMCP server instances and transport entrypoints
├─ progressive/ Progressive capability catalog and guarded execution surface
├─ preprocessing/ Content conversion (ADF and Storage to Markdown)
└─ utils/ Shared utilities (auth, logging, SSL, decorators)
tests/ Pytest suite: unit, integration, and real-API validation
scripts/ OAuth setup and testing scripts

Architecture

  • JiraFetcher and ConfluenceFetcher compose service mixins and expose typed client behavior.
  • servers/main.py selects the runtime transport and profile, then wires dependencies through the application context.
  • MCP_PROFILE=direct|progressive controls whether the server exposes the full tool surface or the curated discovery surface.
  • Progressive mode exposes only *_discover, *_capability_schema, *_execute_read, and *_execute_write_guarded. This is a local fork extension; upstream sooperset/mcp-atlassian does not currently ship src/mcp_atlassian/progressive/.
  • Config is environment-driven via from_env() factories on JiraConfig and ConfluenceConfig.
  • READ_ONLY_MODE=true blocks write tools at server level even when the caller requests a guarded write.
  • JiraFetcher and ConfluenceFetcher compose service mixins and expose typed client behavior.
  • servers/main.py selects the runtime transport and profile, then wires dependencies through the application context.
  • MCP_PROFILE=direct|progressive controls whether the server exposes the full tool surface or the curated discovery surface.
  • Progressive mode exposes only *_discover, *_capability_schema, *_execute_read, and *_execute_write_guarded. This is a local fork extension; upstream sooperset/mcp-atlassian does not currently ship src/mcp_atlassian/progressive/.
  • Config is environment-driven via from_env() factories on JiraConfig and ConfluenceConfig.
  • Authentication supports basic, PAT, OAuth 2.0, and multi-tenant headers.
  • READ_ONLY_MODE=true blocks write tools at server level even when the caller requests a guarded write.

Read the full file on GitHub · 111 lines

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 6d ago First seen · 111 lines · 1,497 tokens per session scan A 565561664c16

Subscribe to this mod's changes

atlassian-mcp AGENTS.md is an instructions file published in the GitHub repository matutezam/atlassian-mcp (0 stars, last pushed 5d ago), licensed MIT. It adds 1,497 tokens to every session, about $0.0075 per session on Opus 5. A static security scan graded it A with 0 findings. It comes from a forked repository.

Related

Other instructions, from other repositories

codex AGENTS.md

AGENTS.md instructions for openai/codex, covering rust/codex-rs, the codex-core crate, code review rules, crate api surface and model visible context.

openai/codex · 5,182 tokens

vscode buildNext.instructions.md

Working notes and architecture documentation for the new esbuild-based build system in build/next. Use when making changes to the new build pipeline (transpile/bundle commands, NLS plugin, source-map handling, resource copying, or self-hosting watch tasks).

microsoft/vscode · 6,785 tokens

next.js AGENTS.md

AGENTS.md instructions for vercel/next.js, covering next.js development guide, codebase structure, monorepo overview, core package: packages/next and other important packages.

vercel/next.js · 7,296 tokens

langchain AGENTS.md

AGENTS.md instructions for langchain-ai/langchain, covering global development guidelines for the langchain monorepo, corridor security analysis, project architecture and context, monorepo structure and development tools & commands.

langchain-ai/langchain · 4,469 tokens

vscode oss-third-party-notices.instructions.md

Instructions for microsoft/vscode, covering vs code oss third-party-notices pipeline, architecture, pipeline flow in ci, applying the notice (cutover) and fallback chain (never fail the build).

microsoft/vscode · 5,001 tokens

spec-kit AGENTS.md

AGENTS.md instructions for github/spec-kit, covering agents.md, about spec kit and specify, quickstart — add a new integration in 5 steps, integration architecture and integrationmanifest — file tracking.

github/spec-kit · 7,104 tokens