dismech AGENTS.md

dismech AGENTS.md is an instructions file for Codex, OpenCode from monarch-initiative/dismech. It costs 93 tokens per session, scanned A, original, BSD-3-Clause.

Repository instructions for working on monarch-initiative/dismech, a project that records disease mechanisms and related evidence.

In plain words
What is it for?
Starting work in the repository, understanding its scope and data model, and regenerating reference caches safely.
Why use it?
They explain which project guidance to read and how to handle generated reference files, so an agent does not edit cached files incorrectly or miss the project’s design decisions.

Instructions file for CodexOpenCode

Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

agentmods
npx agentmods add instructions/monarch-initiative/dismech/agents-md
Clone the repo
git clone --depth 1 https://github.com/monarch-initiative/dismech

Made for: Codex, OpenCode.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for dismech AGENTS.md

README.md
[![agentmods](https://agentmods.dev/badge/instructions/monarch-initiative/dismech/agents-md.svg)](https://agentmods.dev/instructions/monarch-initiative/dismech/agents-md)
Your own site
<a href="https://agentmods.dev/instructions/monarch-initiative/dismech/agents-md"><img src="https://agentmods.dev/badge/instructions/monarch-initiative/dismech/agents-md.svg" alt="Measured on agentmods" height="20"></a>
Per session 93 This file is loaded in full into every session.
When invoked 93 The same file — it is already loaded in full.
Security scan A 0 findings. Scan, not verified.
Origin original No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5 $0.00093 $0.00093
Opus 5 $0.00046 $0.00046
Sonnet 5 $0.00019 $0.00019
Haiku 4.5 $0.00009 $0.00009

Measured 5d ago against content hash d89da0fbe582, method: parsed. Prices are Anthropic first-party input rates as of 2026-08-30, from the pricing page.

Security

Grade A, and why

dismech AGENTS.md scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 5d ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

AGENTS.md · 10 lines

What it actually says

Note that this repo is mostly geared around Claude Code.

You MUST read the full contents of @CLAUDE.md

For Codex and any other agent: never create or hand-edit references_cache/*.md. Regenerate cache files with just fetch-reference <ID> instead.

For the rationale behind project scope, schema, ontology, BioLink/KGX, and evidence decisions, consult the decision register at docs/explanation/design-decisions.md.

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 5d ago First seen · 10 lines · 93 tokens per session scan A d89da0fbe582

Subscribe to this mod's changes

dismech AGENTS.md is an instructions file published in the GitHub repository monarch-initiative/dismech (57 stars, last pushed yesterday), licensed BSD-3-Clause. It adds 93 tokens to every session, about $0.0005 per session on Opus 5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-30.

Related

Other instructions, from other repositories