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paper-search-pro: Instructions file for Claude Code

CLAUDE.md

paper-search-pro CLAUDE.md is an instructions file for Claude Code from O0000-code/paper-search-pro. It costs 1,067 tokens per session, scanned A, original, Apache-2.0.

A repository instruction file for the paper-search-pro project, documenting rules that coding agents must preserve, such as naming, data handling, user workflows, and build behavior.

In plain words
What is it for?
Use it when modifying paper-search-pro, especially when working on journal rankings, source fetching, agent features, or the HTML report build.
Why use it?
It gives agents the project-specific constraints they need before changing code, reducing the risk of breaking established behavior or using incorrect research-metric terms.

Instructions file for Claude Code

Written for Claude Code: the file is CLAUDE.md. Also seen: reads .claude/ paths; mentions CLAUDE.md; mentions subagents.

This is O0000-code/paper-search-pro's own configuration. It tells Claude Code how to work on paper-search-pro itself, so it is not a mod to install elsewhere. Copy it as a starting point and replace the rules that are about this project. Everything paper-search-pro configures →

not rated 228repo +4 changed 1mo ago A scan 1,067 tokens original Apache-2.0
View source ↗ O0000-code/paper-search-pro o0000-code.github.io
Reuse

Borrowing it

Nothing to install: this file belongs to O0000-code/paper-search-pro. Take a copy, put it at the same path in your own repository, and replace the rules that are about this project with yours.

Copy the file
curl -O https://raw.githubusercontent.com/O0000-code/paper-search-pro/main/CLAUDE.md
Clone the repo
git clone --depth 1 https://github.com/O0000-code/paper-search-pro

Made for: Claude Code.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for paper-search-pro CLAUDE.md

README.md
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Your own site
<a href="https://agentmods.dev/instructions/o0000-code/paper-search-pro/claude-md"><img src="https://agentmods.dev/badge/instructions/o0000-code/paper-search-pro/claude-md/github.svg" alt="Measured on agentmods" height="20"></a>

Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.

agentmods 80×15 button for paper-search-pro CLAUDE.md

Your own site · 80×15
<a href="https://agentmods.dev/instructions/o0000-code/paper-search-pro/claude-md"><img src="https://agentmods.dev/badge/instructions/o0000-code/paper-search-pro/claude-md.svg" alt="Reviewed on agentmods" width="80" height="20"></a>
Per session 1,067 This file is loaded in full into every session.
When invoked 1,067 The same file — it is already loaded in full.
Security scan A 0 findings. A grade says what 26 rules found in the file — not that it is safe.
Origin original No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.01067 $0.01067
Opus 5.5 $0.00427 $0.00427
Sonnet 5.5 $0.00213 $0.00213
Haiku 4.5 $0.00107 $0.00107

Measured 1mo ago against content hash 5b23dc6a080b, method: parsed. Prices are Anthropic first-party input rates as of 2026-10-07, from the pricing page.

Security

Grade A, and why

paper-search-pro CLAUDE.md scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 1mo ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

CLAUDE.md · 34 lines

How it starts

The opening of the file, as written. The whole thing — 34 lines — stays where its author put it; the contents beside it link to each section on GitHub.

paper-search-pro — notes for sessions modifying this repo

Published Agent Skill (Apache 2.0). Edit the git repo here; the running copy is separate at ~/.claude/skills/paper-search-pro/ — sync to it (rsync scripts/ references/ assets/ + SKILL.md) for changes to take effect.

Invariants — do not break

  • R-04 naming: OpenAlex / SJR / 中科院(CAS) journal metrics are partitions / open impact, never "Impact Factor". Only JCR IF(YYYY) is a real Impact Factor.
  • R-19 human-path preservation: the human 14-STEP flow — especially STEP 6 (parallel classification SubAgents) and STEP 12 (HTML render) — must stay byte-identical when the agent/headless, source-switch, and journal-rank features are unused. Every new capability is opt-in additive; default = current behavior.
  • Journal-rank data is never committed (Clarivate/SCImago/CAS copyright). It is runtime-fetched from public GitHub mirrors into ~/.paper-search-pro/ranks/. scripts/journal_rank.py is the single canonical rank layer; scripts/sjr_helper.py is superseded (kept for back-compat, not the wired source).
  • Zero new hard dependencies for v2.2 (GitHub-raw fetch uses requests) — keep it that way: no playwright, no heavyweight libs.
  • One coverage estimator: scripts/discovery_curve.py (sample coverage over the run's raw/ retrieval files, bootstrap interval, labelled prior fallback). data_materialization only renders it — never add a second fit there: an improvised τ=80 fallback once became the only path and showed ~99% on every run.
  • Only relevance ranking may use OpenAlex's full-text search=: any other sort (citations, date) matches title_and_abstract.search — full-text matches ranked by citations or date were mostly off-topic (0–8 / 0–24 of 50 on topic across 8 topics, 2026-09-30). The recent layer is relevance within a date window (run_leg("recent")), never "newest first". tests/test_recency_legs.py goes red if either is undone.
  • No evidence never reads as high coverage: the estimator is exactly 1 when it has no singletons to go on (Q1 = 0, or Q1 = 1 and Q2 = 0), so that result is not used — the rcs ≥ 6 band is tried, then the prior capped at 50%. A 100% once stopped a Standard run with two core papers before its citation hop. The design record (history, Undermind, why sample coverage) is outside the repo: ~/Documents/Claude Code/Skills/Enhancement/Paper Search Pro/coverage-estimator/00_design_record.md.

Read the full file on GitHub · 34 lines

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 1mo ago Changed · +4 lines · +354 tokens per session 5b23dc6a080b
  2. 2mo ago First seen · 30 lines · 713 tokens per session scan A 07780c030764

Subscribe to this mod's changes

paper-search-pro CLAUDE.md is an instructions file published in the GitHub repository O0000-code/paper-search-pro (228 stars, last pushed 3d ago), licensed Apache-2.0. It adds 1,067 tokens to every session, about $0.0043 per session on Opus 5.5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-30.

academic-researchagent-skillarxivclaude-code-skillcodexliterature-search
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