Borrowing it
Nothing to install: this file belongs to Sage-Bionetworks/synapse-mcp. Take a copy, put it at the same path in your own repository, and replace the rules that are about this project with yours.
curl -O https://raw.githubusercontent.com/Sage-Bionetworks/synapse-mcp/main/CLAUDE.mdgit clone --depth 1 https://github.com/Sage-Bionetworks/synapse-mcpWrote this? Show the measurements
A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.
[](https://agentmods.dev/instructions/sage-bionetworks/synapse-mcp/claude-md)<a href="https://agentmods.dev/instructions/sage-bionetworks/synapse-mcp/claude-md"><img src="https://agentmods.dev/badge/instructions/sage-bionetworks/synapse-mcp/claude-md/github.svg" alt="Measured on agentmods" height="20"></a>Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.
<a href="https://agentmods.dev/instructions/sage-bionetworks/synapse-mcp/claude-md"><img src="https://agentmods.dev/badge/instructions/sage-bionetworks/synapse-mcp/claude-md.svg" alt="Reviewed on agentmods" width="80" height="20"></a>What it costs to keep this loaded
Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.
| Model | Per session | Once invoked |
|---|---|---|
| Fable 5.1 | $0.01295 | $0.01295 |
| Opus 5 | $0.00647 | $0.00647 |
| Sonnet 5 | $0.00259 | $0.00259 |
| Haiku 4.5 | $0.00129 | $0.00129 |
Grade A, and why
synapse-mcp CLAUDE.md scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 9d ago.
A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.
Nothing flagged
None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.
How it starts
The opening of the file, as written. The whole thing — 59 lines — stays where its author put it; the contents beside it link to each section on GitHub.
Project
FastMCP-based server that exposes Synapse (synapse.org) capabilities to LLMs over MCP. Tool catalog is 72 tools (48 read-only, 24 write/destructive) spanning entity, wiki, team, user, activity, evaluation, submission, schema, organization, form, curation, utility, and search domains.
Stack
- Python 3.11 (CI runs on 3.10)
- FastMCP 3.2.3 (
fastmcp) - synapseclient 4.12.0
- pytest with
anyio(asyncio backend) — seetests/CLAUDE.md - astral/uv for local dev
Commands
- Install deps:
uv sync - Run the full test suite:
uv run pytest - Run a single test file:
uv run pytest tests/test_tool_service.py - Run the BM25 eval with its printed summary:
uv run pytest tests/evals/test_tool_selection.py -s - Run the server over stdio:
uv run synapse-mcp - Run the server over HTTP on :9000 (matches the VS Code launch config):
uv run synapse-mcp --http --host 127.0.0.1 --port 9000
Tool authoring
Every tool is declared via @service_tool (from synapse_mcp.services), never @mcp.tool directly — because the decorator enforces naming, docstring, and tagging conventions at registration time. See doc/tool-authoring.md for the full convention.
- Tool name must start with one of:
get_list_search_create_update_delete_submit_check_validate_register_— decorator raisesValueErrorat import otherwise. - First sentence of
description=must name the concrete Synapse object passed assynapse_object=(head-noun matched, plural allowed) — because LLMs pick tools by reading that sentence first, and a typo'd object name makes selection accuracy drop. - Synonyms live in
synonyms=(...); siblings live insiblings=(...). Never embed them in prose — because theRelated terms:/Distinct from:lines the decorator renders keep the primary description scannable for humans while still feeding the BM25 index. - Tool function bodies stay thin: validate ID with
validate_synapse_id(...), delegate to a service-class method, return — because business logic lives inservices/under@error_boundary. Any logic that escapes the tool wrapper becomes a 500 to the LLM. - ID-accepting parameters must include a concrete example in the description:
syn123456for entity IDs, numeric strings for team/evaluation/submission/user IDs, URI form for JSON schema$id— because LLMs infer argument shape from example values, not just parameter names. - Tool functions put
ctx: Contextlast, EXCEPT when every business arg is optional (defaulted): thenctxcomes first, because Python forbids a non-default arg after a defaulted one (e.g.get_entity_provenance(ctx, entity_id=None, ...)). Service methods takectx: Contextfirst, then business args — noself, since services are@staticmethod. Don't swap the service/tool convention.
What this file has done since we first saw it
Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.
- 9d ago First seen · 59 lines · 1,295 tokens per session scan A 5a2421f28819
synapse-mcp CLAUDE.md is an instructions file published in the GitHub repository Sage-Bionetworks/synapse-mcp (3 stars, last pushed 18d ago), licensed MIT. It adds 1,295 tokens to every session, about $0.0065 per session on Opus 5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-31.
Other instructions, from other repositories
next.js AGENTS.md
AGENTS.md instructions for vercel/next.js, covering next.js development guide, codebase structure, monorepo overview, core package: packages/next and other important packages.
codex AGENTS.md
AGENTS.md instructions for openai/codex, covering rust/codex-rs, the codex-core crate, code review rules, crate api surface and model visible context.
vscode buildNext.instructions.md
Working notes and architecture documentation for the new esbuild-based build system in build/next. Use when making changes to the new build pipeline (transpile/bundle commands, NLS plugin, source-map handling, resource copying, or self-hosting watch tasks).
vscode oss-third-party-notices.instructions.md
Instructions for microsoft/vscode, covering vs code oss third-party-notices pipeline, architecture, pipeline flow in ci, applying the notice (cutover) and fallback chain (never fail the build).
langchain AGENTS.md
AGENTS.md instructions for langchain-ai/langchain, covering global development guidelines for the langchain monorepo, corridor security analysis, project architecture and context, monorepo structure and development tools & commands.
deepseek-harness AGENTS.md
AGENTS.md instructions for deepseek-ai/deepseek-harness, covering agents.md, pre-stable apis and released session data, repository layout, commands and host sandbox failures.