llm-wiki-agent: Instructions file for Codex

AGENTS.md

llm-wiki-agent AGENTS.md is an instructions file for Codex, OpenCode from SamurAIGPT/llm-wiki-agent. It costs 2,349 tokens per session, scanned A, original, MIT.

A set of instructions for maintaining an agent-managed wiki from source documents. It defines how to add documents, search the wiki, check its health, find inconsistencies, and build a knowledge graph—a map of connections between information.

In plain words
What is it for?
Use it to ingest files, query stored knowledge, check for orphaned pages or contradictions, run maintenance checks, and build the wiki’s graph of related information.
Why use it?
It gives the coding agent a consistent way to organize research instead of leaving notes scattered across files. It also explains where source documents, summaries, logs, and indexes belong.

Instructions file for CodexOpenCode

Written for Codex and OpenCode: the file is AGENTS.md. Also seen: mentions Codex; mentions OpenCode.

This is SamurAIGPT/llm-wiki-agent's own configuration. It tells Codex and OpenCode how to work on llm-wiki-agent itself, so it is not a mod to install elsewhere. Copy it as a starting point and replace the rules that are about this project. Everything llm-wiki-agent configures →

About the project

LLM Wiki Agent is a coding-agent workflow that reads source documents and builds a persistent, interconnected wiki from the extracted knowledge. It is for people who want an agent to maintain a structured knowledge base from materials such as documents, web pages, and data files. The catalogue entries provide commands and instructions for ingesting, querying, checking, and visualizing that wiki.

SamurAIGPT/llm-wiki-agent · 3,492 stars · on GitHub

Reuse

Borrowing it

Nothing to install: this file belongs to SamurAIGPT/llm-wiki-agent. Take a copy, put it at the same path in your own repository, and replace the rules that are about this project with yours.

Copy the file
curl -O https://raw.githubusercontent.com/SamurAIGPT/llm-wiki-agent/main/AGENTS.md
Clone the repo
git clone --depth 1 https://github.com/SamurAIGPT/llm-wiki-agent

Made for: Codex, OpenCode.

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README.md
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<a href="https://agentmods.dev/instructions/samuraigpt/llm-wiki-agent/agents-md"><img src="https://agentmods.dev/badge/instructions/samuraigpt/llm-wiki-agent/agents-md.svg" alt="Measured on agentmods" height="20"></a>
Per session 2,349 This file is loaded in full into every session.
When invoked 2,349 The same file — it is already loaded in full.
Security scan A 0 findings. A grade says what 26 rules found in the file — not that it is safe.
Origin original No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.02349 $0.02349
Opus 5 $0.01175 $0.01175
Sonnet 5 $0.00470 $0.00470
Haiku 4.5 $0.00235 $0.00235

Measured 8d ago against content hash 20b68cb912c8, method: parsed. Prices are Anthropic first-party input rates as of 2026-09-07, from the pricing page.

Security

Grade A, and why

llm-wiki-agent AGENTS.md scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 8d ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

AGENTS.md · 295 lines

How it starts

The opening of the file, as written. The whole thing — 295 lines — stays where its author put it; the contents beside it link to each section on GitHub.

LLM Wiki Agent — Schema & Workflow Instructions

This wiki is maintained entirely by your coding agent. No API key or Python scripts needed — just open this repo in Codex, OpenCode, or any agent that reads this file, and talk to it.

How to Use

Describe what you want in plain English:

  • "Ingest this file: raw/papers/my-paper.md"
  • "What does the wiki say about transformer models?"
  • "Check the wiki for orphan pages and contradictions"
  • "Build the knowledge graph"

Or use shorthand triggers:

  • ingest <file> → runs the Ingest Workflow
  • query: <question> → runs the Query Workflow
  • health → runs the Health Workflow (fast, every session)
  • lint → runs the Lint Workflow (expensive, periodic)
  • build graph → runs the Graph Workflow

Directory Layout

raw/          # Immutable source documents — never modify these
wiki/         # Agent owns this layer entirely
  index.md    # Catalog of all pages — update on every ingest
  log.md      # Append-only chronological record
  overview.md # Living synthesis across all sources
  sources/    # One summary page per source document
  entities/   # People, companies, projects, products
  concepts/   # Ideas, frameworks, methods, theories
  syntheses/  # Saved query answers
graph/        # Auto-generated graph data
tools/        # Standalone Python scripts
  health.py   # Structural checks (deterministic, no LLM calls)
  lint.py     # Content quality checks (uses LLM for semantic analysis)
  build_graph.py  # Knowledge graph generation

Page Format

Every wiki page uses this frontmatter:

---
title: "Page Title"
type: source | entity | concept | synthesis
tags: []
sources: []       # list of source slugs that inform this page
last_updated: YYYY-MM-DD
---

Use [[PageName]] wikilinks to link to other wiki pages.


Ingest Workflow

Triggered by: "ingest "

Supported formats: Markdown (.md) is ingested directly. Non-markdown files (.pdf, .docx, .pptx, .xlsx, .html, .txt, .csv, .json, .xml, .rst, .rtf, .epub, .ipynb, .yaml, .yml, .tsv, .wav, .mp3) are auto-converted to markdown via markitdown before ingestion. Use --no-convert to skip auto-conversion.

Read the full file on GitHub · 295 lines

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 8d ago First seen · 295 lines · 2,349 tokens per session scan A 20b68cb912c8

Subscribe to this mod's changes

llm-wiki-agent AGENTS.md is an instructions file published in the GitHub repository SamurAIGPT/llm-wiki-agent (3,492 stars, last pushed 7d ago), licensed MIT. It adds 2,349 tokens to every session, about $0.0117 per session on Opus 5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-30.

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