mcp-fhir-patient-index: Instructions file for Claude Code

CLAUDE.md

mcp-fhir-patient-index CLAUDE.md is an instructions file for Claude Code from Shaumik-Ashraf/mcp-fhir-patient-index. It costs 1,105 tokens per session, scanned A, original, MIT.

Project instructions for an application that manages patient identity records through a FHIR R4 healthcare API, a web interface, and a Model Context Protocol server. They describe the Ruby on Rails stack, setup commands, development workflow, tests, and code checks.

In plain words
What is it for?
Use them when setting up, developing, testing, linting, or reviewing changes in the mcp-fhir-patient-index project.
Why use it?
They give a coding agent the project context and the commands needed to work safely and consistently.

Instructions file for Claude Code

Written for Claude Code: the file is CLAUDE.md. Also seen: mentions CLAUDE.md; mentions Claude Code.

This is Shaumik-Ashraf/mcp-fhir-patient-index's own configuration. It tells Claude Code how to work on mcp-fhir-patient-index itself, so it is not a mod to install elsewhere. Copy it as a starting point and replace the rules that are about this project. Everything mcp-fhir-patient-index configures →

Reuse

Borrowing it

Nothing to install: this file belongs to Shaumik-Ashraf/mcp-fhir-patient-index. Take a copy, put it at the same path in your own repository, and replace the rules that are about this project with yours.

Copy the file
curl -O https://raw.githubusercontent.com/Shaumik-Ashraf/mcp-fhir-patient-index/main/CLAUDE.md
Clone the repo
git clone --depth 1 https://github.com/Shaumik-Ashraf/mcp-fhir-patient-index

Made for: Claude Code.

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Per session 1,105 This file is loaded in full into every session.
When invoked 1,105 The same file — it is already loaded in full.
Security scan A 0 findings. A grade says what 26 rules found in the file — not that it is safe.
Origin original No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.01105 $0.01105
Opus 5 $0.00553 $0.00553
Sonnet 5 $0.00221 $0.00221
Haiku 4.5 $0.00111 $0.00111

Measured 12d ago against content hash 16796c3a4e0a, method: parsed. Prices are Anthropic first-party input rates as of 2026-09-12, from the pricing page.

Security

Grade A, and why

mcp-fhir-patient-index CLAUDE.md scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 12d ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

CLAUDE.md · 109 lines

How it starts

The opening of the file, as written. The whole thing — 109 lines — stays where its author put it; the contents beside it link to each section on GitHub.

CLAUDE.md

This file provides guidance to Claude Code (claude.ai/code) when working with code in this repository.

Project Overview

MCP FHIR Patient Index is a Rails 8 application implementing a Master Patient Index (MPI) with:

  • A FHIR R4 conformant REST API for patient data
  • Model Context Protocol (MCP) server for LLM integration
  • Web UI for patient CRUD and record linking/deduplication
  • Patient identity matching and record linkage workflow

Tech stack: Ruby 3.3.7, Rails 8.0, SQLite3, Hotwire (Stimulus + Turbo), Bootstrap 5.3, ESBuild, Sass.

Commands

Setup

yarn install && bundle
rails db:migrate
rails assets:precompile

Development

# Start all services (web + JS/CSS watchers)
bin/dev   # uses Procfile.dev

# Or individually:
rails server
yarn build --watch
yarn watch:css

Testing

bundle exec rspec                          # all tests
bundle exec rspec spec/models/             # models only
bundle exec rspec spec/path/to/file_spec.rb  # single file
bundle exec rspec spec/path/to/file_spec.rb:42  # single example

Linting & Security

bundle exec rubocop                        # Ruby linter (Rails Omakase style)
bundle exec rubocop -a                     # auto-fix safe violations
./bin/brakeman                             # security scan
yarn herb:lint                             # ERB/view linting
yarn herb:format                           # format views

Frontend builds

yarn build                                 # bundle JS
yarn build:css                             # compile Sass + autoprefixer

FHIR Conformance Testing (Inferno)

cd inferno-tests
bundle install
bundle exec inferno services start
bundle exec inferno start                  # https://localhost:4567
bundle exec inferno services stop

MCP Inspector

npx @modelcontextprotocol/inspector
# Connect to: http://localhost:3000/mcp/v20250618

Architecture

URL Namespaces

  • /fhir/r4/ — FHIR R4 API (metadata, Patient read/search)
  • /mcp/v20250618/ — MCP HTTP streamable transport endpoint
  • /patients/ — Web UI patient CRUD
  • /patient_joins/ — Record linking workflow
  • /settings/ — Application settings

Read the full file on GitHub · 109 lines

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 12d ago First seen · 109 lines · 1,105 tokens per session scan A 16796c3a4e0a

Subscribe to this mod's changes

mcp-fhir-patient-index CLAUDE.md is an instructions file published in the GitHub repository Shaumik-Ashraf/mcp-fhir-patient-index (3 stars, last pushed 3mo ago), licensed MIT. It adds 1,105 tokens to every session, about $0.0055 per session on Opus 5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-31.

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