Research instructions files

1,203 tagged Research, measured the same way as everything else here.

Browse within: model-context-protocol 48knowledge-base 26claude-code-plugin 22academic-writing 19ai-assistant 19copilot 18knowledge-graph 17academic-research 16agentic 15ai-coding 14ai-skills 14literature-review 14llm-tools 14obsidian 14

arabold/docs-mcp-server

Instructions file

Instructions for arabold/docs-mcp-server, a project described as: Grounded Docs MCP Server: Open-Source Alternative to Context7, Nia, and Ref.Tools.

not rated 1.7k +3 5d ago A 5 tokens copy · 100% MIT

classroomio/classroomio

Instructions file CodexOpenCode

AGENTS.md instructions for classroomio/classroomio, covering agent guidance, research requirements, out of scope paths, translation, formatting, and git workflow and verification before commit/pr.

not rated 1.7k +2 changed today B 10,192 tokens AGPL-3.0

AutoSci CLAUDE.md

51

skyllwt/AutoSci

Instructions file

Instructions for skyllwt/AutoSci, covering ωmegawiki — runtime contract, repository layout, link syntax, hard rules and where to look.

not rated 1.7k +5 5d ago A 584 tokens original MIT

ai4s-research/open-science

Instructions file CodexOpenCode

AGENTS.md instructions for ai4s-research/open-science, covering open science desktop, design principles, what this project is, repository map and architecture guardrails.

not rated 1.6k +33 today A 815 tokens

ai4s-research/open-science

Instructions file

Claude Code instructions for ai4s-research/open-science, a project described as: Open Science Desktop — local-first, model-agnostic AI research workbench for macOS, Windows & Linux. Open-source Claude Science desktop alternative built on Tauri + MCP + agent skills.

not rated 1.6k +33 today A 3 tokens

gortex CLAUDE.md

54

zzet/gortex

Instructions file

Claude Code instructions for zzet/gortex, covering gortex, build & test, codebase overview, discovery (read once, then keep using) and llm provider (powers ask and searchsymbols assist: modes).

not rated 1.5k +9 today A 5,172 tokens original Apache-2.0

PixivBiu CLAUDE.md

55

txperl/PixivBiu

Instructions file

Claude Code instructions for txperl/PixivBiu, a project described as: A Pixiv client. Easy to search, browse, and download artworks.

not rated 1.4k +1 today A 6 tokens copy · 100% MIT

OpenRaiser/NanoResearch

Instructions file CodexOpenCode

Instructions for OpenRaiser/NanoResearch, covering nanoresearch — codex integration mode, core goal, pipeline, workspace convention and paper modes.

not rated 1.4k 9d ago A 809 tokens original MIT

OpenRaiser/NanoResearch

Instructions file

Instructions for OpenRaiser/NanoResearch, covering nanoresearch — claude code integration mode, core goal, pipeline, workspace convention and paper modes.

not rated 1.4k 9d ago A 777 tokens original MIT

eatmoreduck/boss-zhipin-scraper

Instructions file CodexOpenCode

Instructions for eatmoreduck/boss-zhipin-scraper, covering agents.md, 这是什么, 目录结构, 环境与命令 and 改代码时的硬规则.

not rated 1.3k +20 20d ago A 1,987 tokens original MIT

first-fluke/oh-my-agent

Instructions file CodexOpenCode

AGENTS.md instructions for first-fluke/oh-my-agent, covering oh-my-agent, architecture, per-agent dispatch, code search and workflows.

not rated 1.3k yesterday A 1,785 tokens original MIT

first-fluke/oh-my-agent

Instructions file

Claude Code instructions for first-fluke/oh-my-agent, covering oh-my-agent, architecture, per-agent dispatch, code search and workflows.

not rated 1.3k changed today A 1,905 tokens original MIT

llm-wiki AGENTS.md

61

nvk/llm-wiki

Instructions file CodexOpenCode

Instructions for nvk/llm-wiki, covering llm wiki — agent instructions, what this is, architecture, hub path and hub (/wiki/).

not rated 1.2k +12 7d ago A 13,715 tokens original MIT

K-Dense-AI/k-dense-byok

Instructions file CodexOpenCode

Instructions for K-Dense-AI/k-dense-byok, covering claude.md, project overview, commands, architecture: how a turn flows and project / sandbox layout.

not rated 1.1k +33 7d ago A 7,467 tokens original MIT

cs CLAUDE.md

64

boyter/cs

Instructions file

Claude Code instructions for boyter/cs, covering claude.md, project overview, build & test commands, architecture and query pipeline (pkg/search/).

not rated 1.1k yesterday A 1,022 tokens original MIT

northword/zotero-format-metadata

Instructions file

Claude Code instructions for northword/zotero-format-metadata, a project described as: Linter for Zotero. A plugin for Zotero to format item metadata. Shortcut to set title rich text; set journal abbreviations, university places, and item languages, etc; detect duplicate items.

not rated 1.0k 3d ago A 3 tokens AGPL-3.0

labs-molt CLAUDE.md

66

NVIDIA-NeMo/labs-molt

Instructions file

Claude Code instructions for NVIDIA-NeMo/labs-molt, a project described as: An agentic-first RL framework for research (9k lines).

not rated 1.0k 2d ago C 74 tokens original Apache-2.0

OSU-NLP-Group/GUI-Agents-Paper-List

Instructions file CodexOpenCode

AGENTS.md instructions for OSU-NLP-Group/GUI-Agents-Paper-List, covering claude.md - gui agents paper list, project overview, canonical update workflow, repository structure and how to add a paper.

not rated 897 +1 17d ago A 2,431 tokens

OSU-NLP-Group/GUI-Agents-Paper-List

Instructions file

Claude Code instructions for OSU-NLP-Group/GUI-Agents-Paper-List, covering claude.md - gui agents paper list, project overview, canonical update workflow, repository structure and how to add a paper.

not rated 897 +1 17d ago A 2,431 tokens

pocketpaw CLAUDE.md

69

pocketpaw/pocketpaw

Instructions file

Claude Code instructions for pocketpaw/pocketpaw, covering claude.md, project overview, knowledge base, search the kb from terminal and show a specific module's wiki.

not rated 877 today A 2,994 tokens original MIT

research AGENTS.md

71

simonw/research

Instructions file CodexOpenCode

AGENTS.md instructions for simonw/research: Start by creating a new folder for your work with an appropriate name.

not rated 765 yesterday A 305 tokens

research CLAUDE.md

72

simonw/research

Instructions file

Claude Code instructions for simonw/research, a project described as: Research projects.

not rated 765 yesterday A 4 tokens