second-brain-os: Instructions file for Claude Code

CLAUDE.md

second-brain-os CLAUDE.md is an instructions file for Claude Code from the-sid-dani/second-brain-os. It costs 4,165 tokens per session, scanned A, original, MIT.

Project instructions for a second-brain system, meaning a structured workspace for storing personal knowledge, projects, and working context. They define which identity, user, tool, and workspace files the assistant should load.

In plain words
What is it for?
Use them when operating the second-brain workspace, especially for loading project context, following its configuration, and using its project-management skills and templates.
Why use it?
They give the assistant a consistent source of project settings and startup guidance. This reduces conflicting instructions and keeps the workspace organized.

Instructions file for Claude Code

Written for Claude Code: $CLAUDE_PROJECT_DIR variable. Also seen: reads .claude/ paths; mentions CLAUDE.md; mentions Claude Code.

This is the-sid-dani/second-brain-os's own configuration. It tells Claude Code how to work on second-brain-os itself, so it is not a mod to install elsewhere. Copy it as a starting point and replace the rules that are about this project. Everything second-brain-os configures →

Reuse

Borrowing it

Nothing to install: this file belongs to the-sid-dani/second-brain-os. Take a copy, put it at the same path in your own repository, and replace the rules that are about this project with yours.

Copy the file
curl -O https://raw.githubusercontent.com/the-sid-dani/second-brain-os/main/CLAUDE.md
Clone the repo
git clone --depth 1 https://github.com/the-sid-dani/second-brain-os

Made for: Claude Code.

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Per session 4,165 This file is loaded in full into every session.
When invoked 4,165 The same file — it is already loaded in full.
Security scan A 0 findings. A grade says what 26 rules found in the file — not that it is safe.
Origin original No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.04165 $0.04165
Opus 5.5 $0.01666 $0.01666
Sonnet 5.5 $0.00833 $0.00833
Haiku 4.5 $0.00417 $0.00417

Measured 7d ago against content hash 22a245e1bf87, method: parsed. Prices are Anthropic first-party input rates as of 2026-10-07, from the pricing page.

Security

Grade A, and why

second-brain-os CLAUDE.md scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 7d ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

CLAUDE.md · 213 lines

How it starts

The opening of the file, as written. The whole thing — 213 lines — stays where its author put it; the contents beside it link to each section on GitHub.

Second-Brain OS — Project Instructions for <assistant.name>

This file is project-scoped instructions only. Persona, user, and tooling context live in dedicated files — do not duplicate them here.

Load Order at Session Start

  1. @SOUL.md — <assistant.name>'s persona, voice, boundaries
  2. @USER.md — <user.name>'s profile, role, communication preferences, team
  3. @IDENTITY.md — <assistant.name>'s name, version, origin
  4. @TOOLS.md — Available tools and capabilities
  5. @README.md — Project map and update rules

If anything below conflicts with those files, those files win.


Configuration — source of truth for skills

Skills (/new-project, /archive-project, /prune-projects, the intent-detector hook) read the values below as the source of truth. To fork this workspace for your own use, run /bootstrap — it walks through these values interactively and rewrites this section. Every skill references these paths and identity values symbolically (e.g., <workspace.projects>) and adapts automatically.

workspace

  • workspace.root = <workspace.root> (default: workspace; rename to workspace, brain, <assistant>-workspace, etc.)
  • workspace.inbox = 0-Inbox
  • workspace.projects = 1-Projects
  • workspace.areas = 2-Areas — thin Area workstations (PARA Areas): rules + memory + a generated index only; starts empty (see the Area model below)
  • workspace.resources = 4-Resources
  • workspace.archive = 5-Archive — archived projects keep their code in an ignored app/ subtree
  • workspace.area_apps = 2-Areas/<area>/apps — shipped, maintained apps (MCP servers, dashboards, sites) owned by an Area; each is gitignored with its own git and an app.manifest.json
  • workspace.project_apps = 1-Projects/COD-*/app — a code project's single gitignored app/ subtree while it is being built

Resolved paths (combine the above): <workspace.root>/<workspace.projects> → e.g., workspace/1-Projects.

templates (under <workspace.root>/<workspace.resources>/templates/)

  • templates.project_claude = project-claude-template.md — for non-code project CLAUDE.md
  • templates.project_memory = project-memory-template.md — for any project's memory.md
  • templates.code_claude = code-project-claude-template.md — for code-repo project CLAUDE.md
  • templates.persona = persona/ — for persona file templates (used by /bootstrap)

Read the full file on GitHub · 213 lines

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 7d ago Changed · +21 lines · +768 tokens per session 22a245e1bf87
  2. 1mo ago First seen · 192 lines · 3,397 tokens per session scan A 8c1a2be27ee4

Subscribe to this mod's changes

second-brain-os CLAUDE.md is an instructions file published in the GitHub repository the-sid-dani/second-brain-os (3 stars, last pushed 7d ago), licensed MIT. It adds 4,165 tokens to every session, about $0.0167 per session on Opus 5.5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-31.

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