biomedical-ai-skills: Instructions file for Gemini CLI

GEMINI.md

biomedical-ai-skills GEMINI.md is an instructions file for Gemini CLI from zamushwani/biomedical-ai-skills. It costs 274 tokens per session, scanned A, original, MIT.

A Gemini CLI instruction file for a cancer-bioinformatics repository. It points Gemini to the repository's shared rules and its 16 domain-specific SKILL.md protocol files.

In plain words
What is it for?
Use it when working on the repository, especially before writing cancer-bioinformatics analysis code or changing a skill.
Why use it?
It helps Gemini follow the repository's required checks, release process and tool-neutral coding rules before making changes.

Instructions file for Gemini CLI

Written for Gemini CLI: the file is GEMINI.md. Also seen: mentions CLAUDE.md; mentions AGENTS.md; mentions Gemini CLI.

This is zamushwani/biomedical-ai-skills's own configuration. It tells Gemini CLI how to work on biomedical-ai-skills itself, so it is not a mod to install elsewhere. Copy it as a starting point and replace the rules that are about this project. Everything biomedical-ai-skills configures →

Reuse

Borrowing it

Nothing to install: this file belongs to zamushwani/biomedical-ai-skills. Take a copy, put it at the same path in your own repository, and replace the rules that are about this project with yours.

Copy the file
curl -O https://raw.githubusercontent.com/zamushwani/biomedical-ai-skills/main/GEMINI.md
Clone the repo
git clone --depth 1 https://github.com/zamushwani/biomedical-ai-skills

Made for: Gemini CLI.

Wrote this? Show the measurements

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README.md
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<a href="https://agentmods.dev/instructions/zamushwani/biomedical-ai-skills/gemini-md"><img src="https://agentmods.dev/badge/instructions/zamushwani/biomedical-ai-skills/gemini-md/github.svg" alt="Measured on agentmods" height="20"></a>

Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.

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<a href="https://agentmods.dev/instructions/zamushwani/biomedical-ai-skills/gemini-md"><img src="https://agentmods.dev/badge/instructions/zamushwani/biomedical-ai-skills/gemini-md.svg" alt="Reviewed on agentmods" width="80" height="20"></a>
Per session 274 This file is loaded in full into every session.
When invoked 274 The same file — it is already loaded in full.
Security scan A 0 findings. A grade says what 26 rules found in the file — not that it is safe.
Origin original No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.00274 $0.00274
Opus 5 $0.00137 $0.00137
Sonnet 5 $0.00055 $0.00055
Haiku 4.5 $0.00027 $0.00027

Measured 11d ago against content hash cd6fc27587fa, method: parsed. Prices are Anthropic first-party input rates as of 2026-09-11, from the pricing page.

Security

Grade A, and why

biomedical-ai-skills GEMINI.md scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 11d ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

GEMINI.md · 23 lines

What it actually says

GEMINI.md

Gemini CLI looks for a file with this name. The instructions for this repository live in AGENTS.md, which is the cross-tool standard and the single source of truth; this file exists so Gemini CLI finds them.

Short version

This repository holds 16 SKILL.md protocol files for cancer bioinformatics under skills/. Read the relevant skills/<name>/SKILL.md before writing analysis code in that domain — each states when it applies in its own ## When to Use This Skill section.

Before changing anything here, read AGENTS.md and CLAUDE.md. The non-negotiables:

  1. Verify every version, signature and default against the registry and package source. Never from memory.
  2. A skill edit must be released in the same session, or pip install serves stale content.
  3. A green CI run is not proof. Verify the published artifact.
  4. Never claim a test passes unless it was executed.
  5. Stage explicit paths. Never git add . — untracked personal files sit in the repository root.

Commands

python3 tools/run_benchmarks.py        # every skill's validation suite
python3 tools/check_portability.py     # verify the skills stay tool-neutral
Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 11d ago First seen · 23 lines · 274 tokens per session scan A cd6fc27587fa

Subscribe to this mod's changes

biomedical-ai-skills GEMINI.md is an instructions file published in the GitHub repository zamushwani/biomedical-ai-skills (1 stars, last pushed 12d ago), licensed MIT. It adds 274 tokens to every session, about $0.0014 per session on Opus 5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-31.

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