cdxml-toolkit-community: Instructions file for Codex

AGENTS.md

cdxml-toolkit-community AGENTS.md is an instructions file for Codex, OpenCode from ZiChenWang114514/cdxml-toolkit-community. It costs 274 tokens per session, scanned A, original, MIT.

A project instruction file for cdxml-toolkit-community, a community toolkit and MCP server for chemical structures and laboratory documents.

In plain words
What is it for?
Maintaining the toolkit package and MCP tools, updating generated documentation, protecting inputs, and running tests and other release checks.
Why use it?
It keeps the toolkit compatible while requiring safe handling of molecular data, generated files, native ChemDraw work, and project checks.

Instructions file for CodexOpenCode

Written for Codex and OpenCode: the file is AGENTS.md.

This is ZiChenWang114514/cdxml-toolkit-community's own configuration. It tells Codex and OpenCode how to work on cdxml-toolkit-community itself, so it is not a mod to install elsewhere. Copy it as a starting point and replace the rules that are about this project. Everything cdxml-toolkit-community configures →

Reuse

Borrowing it

Nothing to install: this file belongs to ZiChenWang114514/cdxml-toolkit-community. Take a copy, put it at the same path in your own repository, and replace the rules that are about this project with yours.

Copy the file
curl -O https://raw.githubusercontent.com/ZiChenWang114514/cdxml-toolkit-community/main/AGENTS.md
Clone the repo
git clone --depth 1 https://github.com/ZiChenWang114514/cdxml-toolkit-community

Made for: Codex, OpenCode.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for cdxml-toolkit-community AGENTS.md

README.md
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Your own site
<a href="https://agentmods.dev/instructions/zichenwang114514/cdxml-toolkit-community/agents-md"><img src="https://agentmods.dev/badge/instructions/zichenwang114514/cdxml-toolkit-community/agents-md/github.svg" alt="Measured on agentmods" height="20"></a>

Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.

agentmods 80×15 button for cdxml-toolkit-community AGENTS.md

Your own site · 80×15
<a href="https://agentmods.dev/instructions/zichenwang114514/cdxml-toolkit-community/agents-md"><img src="https://agentmods.dev/badge/instructions/zichenwang114514/cdxml-toolkit-community/agents-md.svg" alt="Reviewed on agentmods" width="80" height="20"></a>
Per session 274 This file is loaded in full into every session.
When invoked 274 The same file — it is already loaded in full.
Security scan A 0 findings. A grade says what 26 rules found in the file — not that it is safe.
Origin original No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.00274 $0.00274
Opus 5.5 $0.00110 $0.00110
Sonnet 5.5 $0.00055 $0.00055
Haiku 4.5 $0.00027 $0.00027

Measured 1mo ago against content hash 5cd4c3d48b69, method: parsed. Prices are Anthropic first-party input rates as of 2026-10-07, from the pricing page.

Security

Grade A, and why

cdxml-toolkit-community AGENTS.md scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 1mo ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

AGENTS.md · 16 lines

What it actually says

Project Instructions

  • Preserve the cdxml_toolkit import package and the 15 compatible core MCP tool names.
  • Use cdxml_toolkit.mcp_runtime for the complete service and cdxml_toolkit.mcp_server only for core compatibility work.
  • Ground molecular connectivity in a trusted user value, resolver, parser, or OCSR result. Do not invent SMILES.
  • Route structural changes through modify_molecule and inspect its MCS diff.
  • Preserve inputs. Generated artifacts use new paths unless overwrite permission is explicit.
  • Keep native ChemDraw work in isolated workers and under the shared native resource lock.
  • Do not record molecular content, file contents, credentials, or tool arguments in metrics or health responses.
  • Regenerate docs/mcp-tools.md and docs/mcp-schema.json after changing the tool registry.
  • Run pytest -m "not network" -q, package checks, and applicable native probes before release.

Public-facing language

Write public documentation and example captions for readers without conversation history. Do not expose internal experiment identifiers, development stage names, handoff notes, session references or intermediate work logs. Explain technical terms when they help users; retain exact API names, scientific notation, paper compound numbering and necessary compatibility/version requirements. Keep test data identifiers out of homepage artwork and marketing examples.

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 1mo ago Changed · +4 lines · +76 tokens per session 5cd4c3d48b69
  2. 2mo ago First seen · 12 lines · 198 tokens per session scan A 8850ff8062af

Subscribe to this mod's changes

cdxml-toolkit-community AGENTS.md is an instructions file published in the GitHub repository ZiChenWang114514/cdxml-toolkit-community (3 stars, last pushed 20d ago), licensed MIT. It adds 274 tokens to every session, about $0.0011 per session on Opus 5.5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-31.

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