broadinstitute/viral-ngs

viral-ngs: command line tools and wrappers for processing raw viral genomic data

Latest release v3.0.29 · 24 Oct 2026

7 files for Claude Code, Codex, GitHub Copilot and OpenCode: claude-on-vertex-ci, container-vulns, dsub-batch-jobs, regression-testing and 3 more — 6,089 tokens loaded in every session.

Open on GitHub viral-ngs.readthedocs.io

Instructions

viral-ngs copilot-instructions.md .github/copilot-instructions.md A 325 tok
viral-ngs AGENTS.md AGENTS.md A 5,441 tok
viral-ngs CLAUDE.md CLAUDE.md A 323 tok

Skills

claude-on-vertex-ci .agents/skills/claude-on-vertex-ci/SKILL.md A —
container-vulns .agents/skills/container-vulns/SKILL.md A —
dsub-batch-jobs .agents/skills/dsub-batch-jobs/SKILL.md A —
regression-testing .agents/skills/regression-testing/SKILL.md A —

These files are broadinstitute/viral-ngs's own configuration — they tell Claude Code, Codex, GitHub Copilot and OpenCode how to work on this repository, so they are not mods to install elsewhere. Copy one as a starting point and replace the parts that are about this project.