2,288 projects whose own agent configuration covers research. These are not mods to install — they are how the maintainers of these repositories tell an agent what to do, and what to avoid.
All projects Building agents7,450Claude Code6,586Data and AI3,698Backend and APIs3,488Languages3,402Planning3,191Git and workflow3,129Code review2,728Memory and context2,353Testing2,330DevOps and cloud2,293Writing and docs2,283
Any agent Claude CodeCodexOpenCodeGitHub CopilotGemini CLICursorWindsurfKiro
| Project | Stars | Configures | Files | Always loaded |
|---|---|---|---|---|
| teoobarca/perplexity-mcp Free Perplexity AI MCP server with multi-account pooling, React admin dashboard, zero-cost | 13 | Claude Code | 1 | 1,188 tok |
| marduk191/qwen3_mcp MCP server for LM Studio with 80+ tools - file ops, git, web search, skills system | 13 | Claude Code | 1 | 5,679 tok |
| dbcls/togomcp togomcp.rdfportal.org MCP server for life-science knowledge graphs | 13 | Claude Code | 9 | 3,924 tok |
| tarekmo0/HunterStick A persistent context and fieldcraft system for AI-assisted bug bounty hunting. | 13 | Claude Code, Codex, OpenCode | 37 | 7,495 tok |
| martinzokov/open-conclave AI agents conclave | 13 | Claude Code, Codex, OpenCode | 5 | 584 tok |
| Jack-Liang/sap-for-agents SAP NWRFC → REST gateway designed for AI agents: search, inspect, invoke RFC/BAPI, read ta | 13 | Codex, OpenCode | 1 | 5,382 tok |
| ericluo04/claude-academic-workflow Academic research workflow for Claude Code: 20 skills covering causal inference (DiD, RDD, | 13 | Claude Code | 1 | 3,608 tok |
| jordiboehme/crystalline Local-first crystalline intelligence for AI agents: the knowledge that endures across sess | 13 | Claude Code | 1 | 3,747 tok |
| ApiliumCode/mayros apilium.com The governed AI agent platform: semantic memory, intelligent model routing, an MCP server, | 12 | Codex, OpenCode | 1 | 5,416 tok |
| terilios/smartsheet-server MCP server providing healthcare analytics capabilities for Smartsheet, including clinical | 12 | Claude Code | 1 | 2,316 tok |
| him229/stays pypi.org Google Hotels MCP server and Python library — reverse-engineered batchexecute client with | 12 | Claude Code, Codex, OpenCode | 2 | 4,977 tok |
| aytzey/paper-pilot Let Codex and Claude find, download, and read full research papers. A local MCP server wit | 12 | Claude Code, Codex, OpenCode | 2 | 2,411 tok |
| MaesHughes/wuxing-search-mcp Wuxing Search MCP is a powerful, unlimited search server built on top of SearXNG. It integ | 12 | Claude Code | 2 | — |
| georgejeffers/Gemini-MCP-Server A Model Context Protocol (MCP) server that integrates with Google's Gemini Pro model, can | 12 | Cursor | 1 | 266 tok |
| Xinyang-Li666/SciCrucible A Claude-based scientific intelligence knowledge base covering the full cycle from literat | 12 | Claude Code | 10 | 1,107 tok |
| u9401066/med-paper-assistant u9401066.github.io Auditable MCP + cross-agent harness for autonomous and human-guided academic writing—from | 12 | Claude Code, Codex, GitHub Copilot, OpenCode | 50 | 8,475 tok |
| grapeot/tavily-skill Agent-oriented Tavily search and extract CLI with stable JSON output | 12 | Codex, OpenCode | 1 | 285 tok |
| Toadoum/ai-research-skill | 12 | Codex, OpenCode | 1 | 224 tok |
| dengxu11111/dual-ai-paper-coach Claude Code writes the paper. Codex CLI independently reviews it. Together they produce a | 12 | Claude Code, Codex, OpenCode | 10 | 3,597 tok |
| maxkuminov/obsidian-mcp Self-hosted MCP server for Obsidian: semantic + full-text search, wikilink graph, note CRU | 12 | Claude Code | 1 | 3,811 tok |
| guyumengyue/zotero-obsidian-codex-workflow Windows-first Zotero Obsidian Codex literature workflow with one-step bootstrap skill | 12 | Claude Code, Codex, OpenCode | 3 | 484 tok |
| Naptila/recaf-mcp An MCP server for headless Recaf analysis, decompilation, search, bytecode patching, and J | 12 | Codex, OpenCode | 1 | 887 tok |
| rod-moraes/mcp-auvp | 12 | Cursor | 1 | — |
| NewTurn2017/hermes-profile-kit Drop-in Hermes Agent profile kit. Creates four isolated profiles (coder, assistant, resear | 12 | Codex, OpenCode | 1 | 1,272 tok |
| tanchihq/tanchi tanchi.io Autonomous B2B prospecting engine. The AI sources, researches and writes your outreach eve | 12 | Claude Code | 1 | 346 tok |
| ronnycoding/my-personal-assistant Personal AI assistant supporting Claude Code and Gemini CLI - productivity automation, App | 12 | Claude Code, Gemini CLI | 25 | 2,523 tok |
| Muvon/octofs octomind.run Rust MCP server giving AI agents filesystem superpowers: view, edit, batch-edit, shell and | 11 | Codex, OpenCode | 1 | 2,829 tok |
| SpaceFrontiers/mcp spacefrontiers.org Citable research retrieval for AI agents across papers, books, patents, Wikipedia, and pub | 11 | Codex, OpenCode | 1 | 679 tok |
| Agentic-Assets/corbis-literature-starter-kit corbis.ai A lightweight Claude Code project for exploring academic literature, brainstorming researc | 11 | Claude Code, Codex, OpenCode | 4 | 3,020 tok |
| schub-tech/llm-ideation-wiki schub.tech AI-maintained Notion wiki that pressure-tests business ideas into evidence-bound verdicts. | 11 | Claude Code, Codex, OpenCode | 2 | 858 tok |
| jimezsa/opencolab opencolab.ai 🐙 Accelerating Scientific Discovery — Turn your research into an always-on autonomous lab | 11 | Claude Code, Codex, Gemini CLI, OpenCode | 3 | 5,041 tok |
| CyannSHI/ai-interview-kit Engineer user-research methodologies into AI prompts — professional-grade phone interviews | 11 | Claude Code, Codex, GitHub Copilot, OpenCode | 3 | 911 tok |
| xinthink/reader-mcp-server Connect your Readwise Reader library to LLMs. | 11 | Claude Code | 1 | 707 tok |
| markusl/statfin-mcp markusl.github.io Production-grade Model Context Protocol (MCP) server for Statistics Finland's StatFin data | 11 | Claude Code | 1 | 802 tok |
| pr1m8/haive-mcp pypi.org Dynamic MCP integration for AI agents — search 1,960+ servers, install with HITL approval | 11 | Claude Code, Codex, OpenCode | 2 | 3,311 tok |
| SchmiedmayerLab/heartwood schmiedmayerlab.github.io Compliance-first coding harness for working with sensitive biomedical research data. | 11 | Claude Code, Codex, OpenCode | 2 | 2,125 tok |
| Venere-Labs/ragfs venere-labs.github.io A FUSE semantic filesystem for LLM/AI AgentsAgentic FUSE filesystem for LLM agents. Struc | 11 | Claude Code | 1 | 1,101 tok |
| simonsysun/seeklink SeekLink — hybrid semantic search for markdown vaults. Four-channel RRF fusion, MLX rerank | 11 | Claude Code, Codex, OpenCode | 2 | 1,709 tok |
| revfactory/samsung-report revfactory.github.io | 11 | Claude Code | 9 | 239 tok |
| Sungmin-Cho/skill-legal-kr A Korean law and case law lawyer skill (Claude Code project skill) | 11 | Claude Code, Codex, OpenCode | 4 | 1,817 tok |
| leadpoet/leadpoet subnet71.com Open-source Bittensor subnet for a global AI agent competition in sales intelligence | 11 | Claude Code, Codex, OpenCode | 2 | 2,144 tok |
| tsdfs930514/econ-research-workflow Claude Code skills framework for economics research (DID, IV, RDD, Panel, SDID) | 11 | Claude Code | 14 | 3,543 tok |
| aeroxy/gsearch-cli Standalone Google Search CLI powered by Gemini API, sharing auth with Gemini CLI. | 11 | Claude Code, Codex, Gemini CLI, OpenCode | 3 | 328 tok |
| AICMO/Autonomous-Agent-X-Bluesky Self-Managing Agent to Autonomously and Iteratively accomplish given goal/task/outcome (ar | 11 | Claude Code | 5 | 14,576 tok |
| nevaaron/x-smart-read Give your AI agent smart, budget-optimised read access to X/Twitter. Official API, no scra | 11 | Codex, OpenCode | 1 | 2,001 tok |
| marcoemrich/agentic_coding_lab A research lab for agentic coding - use it to verify of falsify, running various agentic s | 11 | Claude Code, OpenCode | 11 | 4,115 tok |
| LAThomson/prism A scaffold for automating science-of-evaluations research | 11 | Claude Code | 1 | — |
| P1-103n1x/bab-ilu A self-growing LLM-Wiki with pre-installed discipline-specific lenses. Forked from skyllwt | 11 | Claude Code, Codex | 20 | 2,094 tok |
| a-attia/scicomp-research-skills Agent skills + workflow templates for scientific-computing research (papers and software). | 11 | Codex, OpenCode | 1 | 7,960 tok |
| mevans2120/design-suite-claude-skills Claude skills for digital product design: user research, concept exploration, and componen | 11 | Claude Code | 3 | — |