Datasets, transformations, and pretrained models for industrial microbes.
Latest release v1.8.4 · 17 Oct 2026
47 files for Claude Code: python-note-updater, GO_DAG_perturbation_visualization_date_filtered_and_unfiltered, add_string_11, coo_transforms and 43 more — 15,565 tokens loaded in every session.
CLAUDE.md A 15,565 tok .claude/settings.json A — .claude/skills/commit/SKILL.md A 22 tok .claude/skills/deprecate/SKILL.md C 82 tok .claude/skills/drain-merge-queue/SKILL.md A 47 tok .claude/skills/drawio-diagram/SKILL.md A 79 tok .claude/skills/enqueue-merge/SKILL.md A 65 tok .claude/skills/fig-swap/SKILL.md A 80 tok .claude/skills/lit-pull/SKILL.md A 54 tok .claude/skills/merge-worktree/SKILL.md A 29 tok .claude/skills/monitor-tcdb-build/SKILL.md C 82 tok .claude/skills/mypy/SKILL.md A 23 tok .claude/skills/paper-edit/SKILL.md A 46 tok .claude/skills/ruff/SKILL.md A 22 tok .claude/skills/setup-worktree/SKILL.md A 29 tok .claude/skills/stage/SKILL.md A 19 tok .claude/skills/uber-implement/SKILL.md A 54 tok .claude/skills/update-notes/SKILL.md A 51 tok .claude/skills/update-src-notes/SKILL.md A 46 tok .claude/skills/update-tasks-weekly/SKILL.md A 29 tok .claude/skills/wt-implement/SKILL.md A 53 tok .claude/skills/wt-write/SKILL.md A 85 tok .claude/skills/wt-cleanup/SKILL.md A 69 tok .claude/skills/best-claude-plan/SKILL.md A 122 tok .claude/skills/test-campaign/SKILL.md A 102 tok .claude/skills/add-dataset/SKILL.md A 52 tok .claude/skills/zot-search/SKILL.md A 93 tok .claude/skills/torchcell-db-build/SKILL.md A 120 tok .claude/skills/db-constitution/SKILL.md A 100 tok .claude/skills/prepare-experiment/SKILL.md A 132 tok .claude/skills/wandb-view/SKILL.md A 82 tok .claude/commands/GO_DAG_perturbation_visualization_date_filtered_and_unfiltered.md A — .claude/commands/add_string_11.md A — .claude/commands/coo_transforms.md A — .claude/commands/dcell_experiment.md A — .claude/commands/dcell_experiment_device_issue.md A — .claude/commands/dcell_experiment_level_refactor.md A — .claude/commands/fixing_go_in_graph.md A — .claude/commands/hetero_cell_bipartite_dango_gi_refactor.md A — .claude/commands/icloss_produces_nan_in_pipeline.md A — .claude/commands/inference_dataset.md A — .claude/commands/load_coo_context.md A — .claude/commands/load_dango_pipeline.md A — .claude/commands/morphology_dataset.md A — .claude/commands/refactor_dcell_model.md A — .claude/commands/review_dcell_model.md A — .claude/agents/python-note-updater.md A — These files are Mjvolk3/torchcell's own configuration — they tell Claude Code how to work on this repository, so they are not mods to install elsewhere. Copy one as a starting point and replace the parts that are about this project.