How real projects configure their agents

43,761 repositories keep their own agent configuration in the open: a CLAUDE.md, a rules file, instructions for Copilot, a skill the project runs on itself. These are not mods to install. They are worth reading for what they reveal — what a maintainer thinks an agent gets wrong.

Building agents7,699Claude Code6,660Data and AI3,668Backend and APIs3,501Languages3,399Planning3,231Git and workflow3,226Code review2,759Testing2,389Memory and context2,368Writing and docs2,333DevOps and cloud2,313Research2,290Frontend2,267Security2,038Project management1,731

All Claude Code31,986 Codex23,430 OpenCode22,372 GitHub Copilot3,564 Gemini CLI1,915 Cursor1,742 Windsurf150 Kiro84

Project Stars Configures Files Always loaded
berntpopp/hpo-link genefoundry.org MCP server for the Human Phenotype Ontology (HPO): phenotype term lookup, the is_a hierarc 1 Claude Code, Codex, OpenCode 10 3,019 tok
Gowindude/canvas-mcp MCP server connecting Claude to Canvas LMS 1 Claude Code 1 442 tok
0xkaz/agentclip agentclip.0xkaz.com Clip browser text, recall it from any AI — Chrome extension + Cloudflare Workers with MCP, 1 Claude Code, Codex, Cursor, OpenCode 4 557 tok
Bazilio-san/mcp-vkusvill MCP server for integration with VkusVill 1 Claude Code, Codex, OpenCode 19 1,798 tok
horiastanxd/claude-init horiastanxd.github.io One command generates AI context files (CLAUDE.md, AGENTS.md, Cursor/Windsurf/Cline, GEMIN 1 Claude Code, Codex, OpenCode 2 1,099 tok
saitoomituru/PSYCHO-Py800MCP MCP bridge for oscilloscope, logic analyzer, and microscope automation. AI-driven waveform 1 Claude Code, Codex, OpenCode 2 2,774 tok
gacabartosz/seo-gaca-mcp SEO GACA MCP — GEO · Audit · Crawl · Analyze — 37 tools: technical SEO, performance (Light 1 Claude Code 1 571 tok
MiiKiyoshi/html-mcp-web Review agent-generated HTML slides/reports in the browser with anchored comments over MCP; 1 Codex, OpenCode 1 21 tok
ZhaoLLe/mcp-bridge A dynamic MCP (Model Context Protocol) service bridge that supports dynamic registration o 1 Claude Code 1 1,061 tok
mokemokechicken/mcp-ai-assistant-iris 1 Claude Code 2 698 tok
schlemperdev/shantycrawl-mcp A lean MCP server for Firecrawl with lazy-loading tool architecture to drastically reduce 1 Codex, OpenCode 1 1,820 tok
wgthomas/wireshark-mcp Network analysis via tshark -- MCP server with 20 tools for capture, analysis, device iden 1 Claude Code 1 544 tok
mjkid221/MCPal npmjs.com Friendly Companion MCP. Get notified when your task is finished! 1 Claude Code, Codex, OpenCode 2 2,223 tok
coroniumio/coronium-proxy-mcp 1 Codex, OpenCode 1 303 tok
marc-shade/enhanced-memory-mcp A high-performance memory management system for AI agents using SQLite with zlib compressi 1 Claude Code 1 2,780 tok
mr-mihu/dsh-dbhub-live DSH database MCP bridge plugin: persistent multi-source dbhub service + workspace-specific 1 Codex, OpenCode 1 7,478 tok
gong8/sentinel-oss Self-hosted governance layer for MCP servers: policy engine, audit log, and multi-transpor 1 Claude Code, Codex, OpenCode 5 1,765 tok
ivan-escribano/mcp-football-eleven An MCP server that connects AI assistants to a real football statistics database search + 1 Claude Code 1 213 tok
fabriciofs/mcp-sql-server MCP Server para integração com Microsoft SQL Server 1 Claude Code 12
Avatarsia/openxe-mcp-server 1 Claude Code 1 272 tok
muhammadyusuf-kurbonov/utel-mcp 1 Claude Code, Codex, OpenCode 2 514 tok
kud/mcp-harness-fme kud.io 🚩 Manage Harness FME (Split.io) feature flags & segments from any MCP client — list, togg 1 Claude Code 1 23 tok
treuille/dauphin-notion-mcp A token-efficient, parallel MCP server for Notion 1 Claude Code 1
rbj2000/mcp-crawl4ai-rag Database-agnostic MCP server for web crawling and RAG with support for Supabase, SQLite, P 1 Claude Code 1 3,830 tok
jakeb-grant/d3-mcp-server MCP server providing D3.js API documentation to AI agents 1 Claude Code 1 1,922 tok
andrasfe/genetic-mcp MCP for using Genetic Algorithm for selecting the top brainstorming ideas out of a populat 1 Claude Code 7 7,358 tok
mlauf-labs/saga-core SAGA - a self-organizing, AI-native document archive (core backend: ingestion, LLM enrichm 1 Claude Code, Codex, OpenCode 2 1,666 tok
konbakuyomu/pyocd-debug-mcp MCP Server for AI-powered embedded MCU debugging via pyOCD + CMSIS-DAP 1 Claude Code 23
loosheng/knife4j-mcp knife4j mcp server 1 Claude Code 1 928 tok
biocontext-ai/nucleotide_archive_mcp European Nucleotide Archive dataset search MCP server for agentic RNA-sequencing data disc 1 Claude Code, Codex, OpenCode 2 492 tok
andreahaku/code-analysis-context-python-mcp 1 Claude Code 2 1,830 tok
thijs-hakkenberg/contextmapper_mcp An MCP server for https://contextmapper.org 1 Claude Code 1 2,403 tok
yanggf8/amazon-q-cli-mcp-server Amazon Q CLI MCP Server - Provides Amazon Q capabilities to MCP hosts like Claude Desktop 1 Claude Code 1 711 tok
minhhua-EH/semantica-search-mcp 1 Claude Code 1 1,626 tok
AlgoChains/algochains-mcp-server AlgoChains MCP Server — Universal broker connectors, MCPT strategy validation, and AI mark 1 Codex, OpenCode 1 9,231 tok
thenets/ghost-mcp MCP server for Ghost.org blog platform. 1 Claude Code 1 18 tok
abrahamADSK/fpt-mcp MCP server for Autodesk Flow Production Tracking — full ShotGrid API access with RAG searc 1 Claude Code 1 9,499 tok
success-meta-1/fraud-detection-mcp 1 Claude Code 1 7,478 tok
Malaccamaxgit/whatsapp-mcp-docker WhatsApp MCP server for Docker Desktop MCP Toolkit — 30+ tools for messaging, groups, cont 1 Claude Code 1 1,980 tok
tako0614/takos-office Takos Office — unified self-hostable docs/slide/sheet worker (agent-native via MCP) 1 Claude Code, Codex, OpenCode 2 1,037 tok
Tymek/js-mcp MCP server for JS/TS development with intelligent project tooling and testing capabilities 1 GitHub Copilot 1 388 tok
condensetech/clockify-mcp-server 1 Claude Code 1 4 tok
u-akira/toio-mcp 1 Claude Code 1 1,034 tok
Hao17/LiteGhidraMCP Lite Ghidra MCP Server using Ghidrathon 1 Claude Code 4 12,775 tok
SnowLightPath/extended-mind Personal Context Protocol — shared context across AI platforms via MCP 1 Codex, OpenCode 1 1,258 tok
pascalhubacher/confluence confluence mcp for atlassian cloud 1 OpenCode 1
Krishcalin/Agentic-AI-Cyber-Security An open-source Python based source code analyzer to identify security flaws, flags fictiti 1 Claude Code 1 6,452 tok
harutomo51/kokkai-mcp MCP for retrieving minutes from the National Diet proceedings search system. 1 Claude Code 23 1,265 tok
mgalbakri/claude-code-mastery agentcodeacademy.com Agent Code Academy — A free 12-week course from zero coding to AI coding mastery with Clau 1 Claude Code 14 1,029 tok
dcierra/DarwinRelay Turn ChatGPT and other MCP clients into local agents on macOS — shell, files, PTY, browser 1 Codex, OpenCode 1 3,046 tok