workflow-rules

workflow-rules is a cursor rule for Cursor from NVIDIA-BioNeMo/bionemo-agent-toolkit. It costs 119 tokens per session (457 once invoked), scanned A, original, no licence file.

A set of routing rules for choosing and coordinating protein-binder design workflows. It combines a Proteina-Complexa workflow with a workflow using RFdiffusion, ProteinMPNN, and Boltz2 or OpenFold3.

In plain words
What is it for?
Use it to select a design route, resolve a target and its binding hotspots, and coordinate de novo protein-binder design.
Why use it?
It removes the need to decide manually which binder-design workflow to use for a target and how to connect the steps.

Cursor rule for Cursor

Written for Cursor: a Cursor rule (.mdc).

Good fit Use it to select a design route, resolve a target and its binding hotspots, and coordinate de novo protein-binder design.

Compare 6 cursor rules from other repositories ↓
Install with agentmods
npx agentmods add rules/nvidia-bionemo/bionemo-agent-toolkit/workflow-rules
Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

Clone the repo
git clone --depth 1 https://github.com/NVIDIA-BioNeMo/bionemo-agent-toolkit

Made for: Cursor.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for workflow-rules

README.md
[![agentmods](https://agentmods.dev/badge/rules/nvidia-bionemo/bionemo-agent-toolkit/workflow-rules/github.svg)](https://agentmods.dev/rules/nvidia-bionemo/bionemo-agent-toolkit/workflow-rules)
Your own site
<a href="https://agentmods.dev/rules/nvidia-bionemo/bionemo-agent-toolkit/workflow-rules"><img src="https://agentmods.dev/badge/rules/nvidia-bionemo/bionemo-agent-toolkit/workflow-rules/github.svg" alt="Measured on agentmods" height="20"></a>

Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.

agentmods 80×15 button for workflow-rules

Your own site · 80×15
<a href="https://agentmods.dev/rules/nvidia-bionemo/bionemo-agent-toolkit/workflow-rules"><img src="https://agentmods.dev/badge/rules/nvidia-bionemo/bionemo-agent-toolkit/workflow-rules.svg" alt="Reviewed on agentmods" width="80" height="20"></a>
Per session 119 Only the description is in the session, so the agent can decide to use it. The body loads when it is invoked.
When invoked 457 The whole file, excluding the scripts and references it only reads on demand.
Security scan A 0 findings. A grade says what 26 rules found in the file — not that it is safe.
Origin unknown No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.00119 $0.00457
Opus 5.5 $0.00048 $0.00183
Sonnet 5.5 $0.00024 $0.00091
Haiku 4.5 $0.00012 $0.00046

Measured 1mo ago against content hash 59defb20b23a, method: parsed. Prices are Anthropic first-party input rates as of 2026-10-07, from the pricing page.

Security

Grade A, and why

workflow-rules scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 1mo ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

workflows/generative-protein-binder-design/workflow-rules.mdc · 36 lines

The source is not reproduced here

A licence we could not identify

The repository carries a LICENSE file, but it is custom or dual enough that GitHub cannot name it and neither can this catalogue. Unknown terms are not permission, so the body is not copied here. Read the licence at the source and decide for yourself.

Read it on GitHub

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 1mo ago First seen · 36 lines · 119 tokens per session scan A 59defb20b23a

Subscribe to this mod's changes

workflow-rules is a cursor rule published in the GitHub repository NVIDIA-BioNeMo/bionemo-agent-toolkit (484 stars, last pushed 2d ago), with no licence file. It adds 119 tokens to every session and 457 once invoked, about $0.0005 per session on Opus 5.5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-30.