openpgx-research

A research workflow for creating OpenPGx pharmacogenomic and nutrigenomic study records from genes or rsIDs. Pharmacogenomics studies how genes affect responses to medicines; nutrigenomics studies how genes relate to nutrition.

In plain words
What is it for?
Use it to research genes or SNPs, add genes to the catalogue, create study JSON files, expand OpenPGx, or process the listed research sources and tasks.
Why use it?
It structures gene and genetic-variant research into study files that can be added to the OpenPGx database.

Cursor rule for Cursor

Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

agentmods
npx agentmods add rules/open-pgx/openpgx/openpgx-research
Clone the repo
git clone --depth 1 https://github.com/open-pgx/openpgx

Made for: Cursor.

Per session 0 Nothing until a file matches its globs; then the whole rule loads.
When invoked 2,167 The whole file, excluding the scripts and references it only reads on demand.
Security scan A 0 findings. Scan, not verified.
Origin unknown No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5 $0.00000 $0.02167
Opus 5 $0.00000 $0.01084
Sonnet 5 $0.00000 $0.00433
Haiku 4.5 $0.00000 $0.00217

Measured 2d ago against content hash fea4e55d3706, method: parsed. Prices are Anthropic first-party input rates as of 2026-08-30, from the pricing page.

Security

Grade A, and why

openpgx-research scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 2d ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

.cursor/rules/openpgx-research.mdc · 205 lines

The source is not reproduced here

No licence file

A repository with no LICENSE is all rights reserved by default, so the body is not copied here. The metadata, the measurements and the link are.

Read it on GitHub

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 2d ago First seen · 205 lines · 0 tokens per session scan A fea4e55d3706

Subscribe to this mod's changes

openpgx-research is a cursor rule published in the GitHub repository open-pgx/openpgx (11 stars, last pushed 4mo ago), with no licence file. It costs nothing until one of its globs matches a file; then it loads 2,167 tokens. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-31.