biomedical-database

biomedical-database is a cursor rule for Cursor from stanveer/Biomedical-Agent-DB-Karpathy. It costs 157 tokens per session, scanned A, original, MIT.

Rules for storing biomedical data, including its source, original record identifier, release, import time, and supporting evidence.

In plain words
What is it for?
Use them when changing biomedical database schemas, importing or standardising records, validating identifiers, or modelling evidence and relationships.
Why use it?
They prevent different biomedical entity types from being incorrectly merged and stop uncertain terms or source disagreements from being silently overwritten.

Cursor rule for Cursor

Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

agentmods
npx agentmods add rules/stanveer/biomedical-agent-db-karpathy/biomedical-database
Clone the repo
git clone --depth 1 https://github.com/stanveer/Biomedical-Agent-DB-Karpathy

Made for: Cursor.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for biomedical-database

README.md
[![agentmods](https://agentmods.dev/badge/rules/stanveer/biomedical-agent-db-karpathy/biomedical-database.svg)](https://agentmods.dev/rules/stanveer/biomedical-agent-db-karpathy/biomedical-database)
Your own site
<a href="https://agentmods.dev/rules/stanveer/biomedical-agent-db-karpathy/biomedical-database"><img src="https://agentmods.dev/badge/rules/stanveer/biomedical-agent-db-karpathy/biomedical-database.svg" alt="Measured on agentmods" height="20"></a>
Per session 157 This file is loaded in full into every session.
When invoked 157 The same file — it is already loaded in full.
Security scan A 0 findings. Scan, not verified.
Origin original No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5 $0.00157 $0.00157
Opus 5 $0.00078 $0.00078
Sonnet 5 $0.00031 $0.00031
Haiku 4.5 $0.00016 $0.00016

Measured 4d ago against content hash 690ab129e876, method: parsed. Prices are Anthropic first-party input rates as of 2026-08-30, from the pricing page.

Security

Grade A, and why

biomedical-database scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 4d ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

.cursor/rules/biomedical-database.mdc · 24 lines

What it actually says

Biomedical Database Rule

Before editing, read:

  • docs/chat-context.md
  • docs/architecture.md
  • CLAUDE.md
  • .agents/skills/biomedical-database/SKILL.md
  • schema/tables.sql

Rules:

  • Never invent biomedical identifiers.
  • Never collapse gene, protein, variant, disease, chemical, pathway, and paper into one generic concept without justification.
  • Preserve source namespace, source record ID, release, and ingest timestamp.
  • Preserve ambiguity instead of silently normalizing uncertain terms.
  • Keep schema changes minimal and justified by an explicit gap.
  • Keep extracted evidence separate from curated assertions.
Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 4d ago First seen · 24 lines · 157 tokens per session scan A 690ab129e876

Subscribe to this mod's changes

biomedical-database is a cursor rule published in the GitHub repository stanveer/Biomedical-Agent-DB-Karpathy (2 stars, last pushed 4mo ago), licensed MIT. It adds 157 tokens to every session, about $0.0008 per session on Opus 5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-31.