ref-reconcile

ref-reconcile is a skill for Claude Code from Abilityai/cornelius. It costs 94 tokens per session (2,035 once invoked), scanned A, original, MIT.

A controlled maintenance workflow for keeping a reference collection accurate and consistent. It finds conflicting notes, broken links, and duplicate records, then repairs them with human approval.

In plain words
What is it for?
It helps reconcile company or entity records, restore two-way links, remove dead references, merge duplicates, and rebuild the search index after changes.
Why use it?
It prevents a knowledge base from becoming unreliable as records and links change. Human approval helps avoid unwanted changes to source notes.

Skill for Claude Code

Written for Claude Code: allowed-tools in frontmatter. Also seen: names the AskUserQuestion tool.

Good fit It helps reconcile company or entity records, restore two-way links, remove dead references, merge duplicates, and rebuild the search index after changes.

Compare 6 skills from other repositories ↓
Install with agentmods
npx agentmods add skills/abilityai/cornelius/ref-reconcile
Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

Any agent
npx skills add Abilityai/cornelius --skill ref-reconcile
Clone the repo
git clone --depth 1 https://github.com/Abilityai/cornelius

Made for: Claude Code.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for ref-reconcile

README.md
[![agentmods](https://agentmods.dev/badge/skills/abilityai/cornelius/ref-reconcile.svg)](https://agentmods.dev/skills/abilityai/cornelius/ref-reconcile)
Your own site
<a href="https://agentmods.dev/skills/abilityai/cornelius/ref-reconcile"><img src="https://agentmods.dev/badge/skills/abilityai/cornelius/ref-reconcile.svg" alt="Measured on agentmods" height="20"></a>
Per session 94 Skills are progressive disclosure: only the name and description are preloaded; the body loads when the skill is used.
When invoked 2,035 The whole file, excluding the scripts and references it only reads on demand.
Security scan A 0 findings. A grade says what 26 rules found in the file — not that it is safe.
Origin original No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.00094 $0.02035
Opus 5 $0.00047 $0.01018
Sonnet 5 $0.00019 $0.00407
Haiku 4.5 $0.00009 $0.00203

Measured 3d ago against content hash cb41a604228f, method: parsed. Prices are Anthropic first-party input rates as of 2026-09-07, from the pricing page.

Security

Grade A, and why

ref-reconcile scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 3d ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

.claude/skills/ref-reconcile/SKILL.md · 93 lines

How it starts

The opening of the file, as written. The whole thing — 93 lines — stays where its author put it; the contents beside it link to each section on GitHub.

Ref Reconcile

ℹ️ First, set expectations: before anything else, print one short line with this skill's version and its most recent change — the top entry of metadata.changelog above — e.g. ref-reconcile v1.0 — recent: initial version. Then proceed.

The act on top of ref-audit's report. ref-audit senses (read-only, autonomous); ref-reconcile fixes (human-gated). It protects the property that makes a reference scope a source of truth: one canonical note per real-world entity, with consistent bidirectional links and no dangling references.

Read first: resources/layered-brains/COMPANY-BRAIN-SCHEMA.md → "Canonical source of truth" + "The update model"; resources/layered-brains/REFERENCE-SCOPE-SCHEMA.md.

Composes

  • /ref-audit — the sense/detection pass (do not re-implement the scan here).

State Dependencies

Source Location Read Write Description
Company family Brain/Company/*/*.md ✓ (gated) Entity notes reconciled
Audit report resources/company-brain/reports/ Consumed for detection
LBS index resources/local-brain-search/data/ ✓ (reindex) Rebuilt after any write

Process

Step 1 — SENSE (auto)

Detection has two sources — don't attribute to ref-audit what it doesn't compute:

From /ref-audit (structural, single-authored there — do not re-implement): dangling links, orphan entities, duplicate candidates, plus the frontmatter/provenance/enum/partition/as_of violations. Invoke it (or read its latest report).

In this skill (relational, needs the references-vs-relations judgment ref-audit deliberately avoids):

  • Conflicts — two notes asserting contradictory facts about one entity. Read the duplicate/near-name clusters ref-audit flags and compare their bodies.
  • Bidirectional-link asymmetry — but only for relation links, never reference links. A ## Relations entry that names a mutual tie (client: [[B]], Partner of: [[B]], Engagement: [[B]]) should reciprocate; a directional reference (built on [[Trinity]], competitor of [[X]], runs on [[Y]]) must not be forced to back-link. ref-audit reports the family CLEAN despite dozens of such directional links precisely because a blanket A→B⇒B→A check would be almost all false positives — so scope the reciprocity check to relation verbs only:
    cd Brain/Company
    # Mutual-tie relation links whose reciprocal is worth checking.
    # Case-insensitive (-i) and connector-agnostic: matches BOTH "Client of [[..]]" and the colon
    # form "client: [[..]]" the migrated notes actually use. The verb must LEAD the label (~12 chars)
    # so prose bullets that merely contain a verb word (e.g. "…problem owners…") aren't flagged.
    # No \b — BSD/macOS grep does not support it. TUNE THE VERB SET to the scope's real vocabulary.
    grep -rniE '^- [^[]{0,12}(client|partner|vendor|counsel|owner|owns|engagement|collaborat|advis)[^[]*\[\[' */*.md
    
    (The old space-only, capitalized set — Client of|Vendor to|… — matched only 4 of the family's ~28 mutual relations; the family is predominantly lowercase colon-form.) For each match, confirm the named target carries the reciprocal relation; if not, it's a repair candidate (Step 2).

Read the full file on GitHub · 93 lines

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 3d ago First seen · 93 lines · 94 tokens per session scan A cb41a604228f

Subscribe to this mod's changes

ref-reconcile is a skill published in the GitHub repository Abilityai/cornelius (106 stars, last pushed 14d ago), licensed MIT. It adds 94 tokens to every session and 2,035 once invoked, about $0.0005 per session on Opus 5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-09-03.

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