research-assistant

research-assistant is a skill for Claude Code, Codex from adolinjonathan-bot/zotero-toolkit. It costs 35 tokens per session (855 once invoked), scanned A, original, MIT.

A research workflow for finding, checking, organizing, and citing papers in a Zotero library. Zotero is a reference manager, and the workflow searches titles, authors, full text, tags, and attached documents.

In plain words
What is it for?
Use it to discover papers, verify claims in full text, add references, and produce formatted citations or bibliographies.
Why use it?
It helps keep literature answers traceable to source records instead of relying on unsupported claims or incomplete searches.

Skill for Claude CodeCodex

Written for no agent in particular: nothing here depends on one.

Good fit Use it to discover papers, verify claims in full text, add references, and produce formatted citations or bibliographies.

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Install with agentmods
npx agentmods add skills/adolinjonathan-bot/zotero-toolkit/research-assistant
Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

Any agent
npx skills add adolinjonathan-bot/zotero-toolkit --skill research-assistant
Clone the repo
git clone --depth 1 https://github.com/adolinjonathan-bot/zotero-toolkit

Made for: Claude Code, Codex.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for research-assistant

README.md
[![agentmods](https://agentmods.dev/badge/skills/adolinjonathan-bot/zotero-toolkit/research-assistant/github.svg)](https://agentmods.dev/skills/adolinjonathan-bot/zotero-toolkit/research-assistant)
Your own site
<a href="https://agentmods.dev/skills/adolinjonathan-bot/zotero-toolkit/research-assistant"><img src="https://agentmods.dev/badge/skills/adolinjonathan-bot/zotero-toolkit/research-assistant/github.svg" alt="Measured on agentmods" height="20"></a>

Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.

agentmods 80×15 button for research-assistant

Your own site · 80×15
<a href="https://agentmods.dev/skills/adolinjonathan-bot/zotero-toolkit/research-assistant"><img src="https://agentmods.dev/badge/skills/adolinjonathan-bot/zotero-toolkit/research-assistant.svg" alt="Reviewed on agentmods" width="80" height="20"></a>
Per session 35 Skills are progressive disclosure: only the name and description are preloaded; the body loads when the skill is used.
When invoked 855 The whole file, excluding the scripts and references it only reads on demand.
Security scan A 0 findings. A grade says what 26 rules found in the file — not that it is safe.
Origin original No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.00035 $0.00855
Opus 5.5 $0.00014 $0.00342
Sonnet 5.5 $0.00007 $0.00171
Haiku 4.5 $0.00003 $0.00085

Measured today against content hash 85150293f272, method: parsed. Prices are Anthropic first-party input rates as of 2026-10-07, from the pricing page.

Security

Grade A, and why

research-assistant scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured today.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

agent-skills/research-assistant/SKILL.md · 50 lines

How it starts

The opening of the file, as written. The whole thing — 50 lines — stays where its author put it; the contents beside it link to each section on GitHub.

Research Assistant Skill

Use this skill for day-to-day research tasks over a Zotero library: answering literature questions, finding relevant references, checking claims against full text, filing new references with valid schemas, and generating formatted citations and bibliographies.

Core Principles

  1. Choose the right search mode (qmode).
    • Use qmode="titleCreatorYear" when looking for a specific author, title keyword, or core topic.
    • Use qmode="everything" (the default) when searching for concepts, methods, or quotes that may appear inside attached PDFs.
  2. Use boolean filters to narrow results.
    • item_type="-attachment" excludes standalone files.
    • item_type="journalArticle || conferencePaper" matches either type.
    • tag="-Read" finds items not yet tagged Read.
    • Always check exact tag spelling with zotero_list_tags before filtering by tag.
  3. Ground every literature claim in a Zotero item key. Cite both the author-year and [key: ABCD1234] during drafting so every statement traces to a specific record in the library, then render final citations with zotero_get_citations.
  4. Check schema before creating unfamiliar item types. Call zotero_get_item_type_schema(item_type=...) before calling zotero_create_item on types like report, thesis, presentation, or statute so Zotero does not reject invalid field names.

Common Workflows

1. Answering a Research Question from the Library

  1. Search broadly, then precisely: Run zotero_search_items with targeted keywords and item_type="-attachment". If results are noisy, switch to qmode="titleCreatorYear".
  2. Batch-read metadata: Use zotero_get_items to inspect abstracts and metadata for the top candidates in a single request.
  3. Verify against full text: For the most relevant papers, call zotero_get_item_fulltext to verify methods, sample details, and exact claims rather than relying solely on abstracts.
  4. Synthesize with citations: Group findings thematically, noting agreements, contradictions, and gaps across studies, and call zotero_get_citations (style="apa", "vancouver", "harvard-cite-them-right", etc.) to append a properly formatted reference list.

Read the full file on GitHub · 50 lines

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. today First seen · 50 lines · 35 tokens per session scan A 85150293f272

Subscribe to this mod's changes

research-assistant is a skill published in the GitHub repository adolinjonathan-bot/zotero-toolkit (1 stars, last pushed yesterday), licensed MIT. It adds 35 tokens to every session and 855 once invoked, about $0.0001 per session on Opus 5.5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-10-24.