paper2pr: Skill for Claude Code

.claude/skills/deep-audit/SKILL.md

deep-audit is a skill for Claude Code from alohays/paper2pr. It costs 76 tokens per session (1,499 once invoked), scanned A, original, MIT.

A repository-wide consistency check that uses four specialist reviewers to inspect documentation, code, counts, paths, and cross-references. A repository is the project folder containing the code and its supporting files.

In plain words
What is it for?
Use it after large repository updates, before a release, or when you ask for an audit. It checks the project, fixes the issues it finds, and repeats the review until clean.
Why use it?
It finds mismatched facts, broken references, code problems, and inconsistencies that can remain hidden after broad changes.

Skill for Claude Code

Written for Claude Code: allowed-tools in frontmatter. Also seen: reads .claude/ paths; mentions Claude Code; mentions AGENTS.md.

This is alohays/paper2pr's own configuration. It tells Claude Code how to work on paper2pr itself, so it is not a mod to install elsewhere. Copy it as a starting point and replace the rules that are about this project. Everything paper2pr configures →

Reuse

Borrowing it

Nothing to install: this file belongs to alohays/paper2pr. Take a copy, put it at the same path in your own repository, and replace the rules that are about this project with yours.

Copy the file
curl -O https://raw.githubusercontent.com/alohays/paper2pr/main/.claude/skills/deep-audit/SKILL.md
Clone the repo
git clone --depth 1 https://github.com/alohays/paper2pr

Made for: Claude Code.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for deep-audit

README.md
[![agentmods](https://agentmods.dev/badge/skills/alohays/paper2pr/deep-audit/github.svg)](https://agentmods.dev/skills/alohays/paper2pr/deep-audit)
Your own site
<a href="https://agentmods.dev/skills/alohays/paper2pr/deep-audit"><img src="https://agentmods.dev/badge/skills/alohays/paper2pr/deep-audit/github.svg" alt="Measured on agentmods" height="20"></a>

Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.

agentmods 80×15 button for deep-audit

Your own site · 80×15
<a href="https://agentmods.dev/skills/alohays/paper2pr/deep-audit"><img src="https://agentmods.dev/badge/skills/alohays/paper2pr/deep-audit.svg" alt="Reviewed on agentmods" width="80" height="20"></a>
Per session 76 Skills are progressive disclosure: only the name and description are preloaded; the body loads when the skill is used.
When invoked 1,499 The whole file, excluding the scripts and references it only reads on demand.
Security scan A 0 findings. A grade says what 26 rules found in the file — not that it is safe.
Origin original No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.00076 $0.01499
Opus 5.5 $0.00030 $0.00600
Sonnet 5.5 $0.00015 $0.00300
Haiku 4.5 $0.00008 $0.00150

Measured 1mo ago against content hash ffd62148be2a, method: parsed. Prices are Anthropic first-party input rates as of 2026-10-07, from the pricing page.

Security

Grade A, and why

deep-audit scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 1mo ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

.claude/skills/deep-audit/SKILL.md · 135 lines

How it starts

The opening of the file, as written. The whole thing — 135 lines — stays where its author put it; the contents beside it link to each section on GitHub.

/deep-audit — Repository Infrastructure Audit

Run a comprehensive consistency audit across the entire repository, fix all issues found, and loop until clean.

When to Use

  • After broad changes (new skills, rules, hooks, scripts, AGENTS.md edits)
  • Before releases or major commits
  • When the user asks to "find inconsistencies", "audit", or "check everything"

Workflow

PHASE 1: Launch 4 Parallel Audit Agents

Launch these 4 agents simultaneously using Agent with subagent_type=general-purpose:

Agent 1: Canonical Docs Accuracy

Focus: AGENTS.md (the single canonical description) and README.md (short external intro)

  • All numeric claims match reality (skill count, agent count, rule count, hook count, script count)
  • All file paths mentioned actually exist on disk
  • All skill/agent/rule/script names match actual directory and file names
  • Code examples and commands are correct (scripts/deckpath.py, scripts/deckprofile.py, scripts/new_deck.py flags exist)
  • Cross-references resolve
  • No stale counts, and no mentions of layers that git history shows as removed
Agent 2: Hook Code Quality

Focus: .claude/hooks/*.py and .claude/hooks/*.sh

  • No remaining /tmp/ usage (should use ~/.claude/sessions/)
  • Hash length consistency ([:8] across all hooks)
  • Proper error handling (fail-open pattern: top-level try/except with sys.exit(0))
  • JSON input/output correctness (stdin for input, stdout/stderr for output)
  • Exit code correctness (0 for non-blocking, non-zero only when intentionally blocking)
  • from __future__ import annotations for Python 3.8+ compatibility
  • Correct field names from hook input schema (source not type for SessionStart)
  • PreCompact hooks print to stderr (stdout is ignored)
Agent 3: Skills, Agents, and Rules Consistency

Focus: .claude/skills/*/SKILL.md, .claude/agents/*.md, .claude/rules/*.md, .claude/rules/slide-profiles/*.yml

  • Valid YAML frontmatter in all files
  • No stale disable-model-invocation: true
  • allowed-tools values are sensible
  • Rule paths: reference existing directories
  • No contradictions between rules, or between a rule and the profile numbers the gate enforces
  • AGENTS.md skills and agents tables match actual directories 1:1
  • Every agent a skill launches exists in .claude/agents/
  • All templates referenced in rules/skills exist in templates/

Read the full file on GitHub · 135 lines

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 1mo ago First seen · 135 lines · 76 tokens per session scan A ffd62148be2a

Subscribe to this mod's changes

deep-audit is a skill published in the GitHub repository alohays/paper2pr (6 stars, last pushed today), licensed MIT. It adds 76 tokens to every session and 1,499 once invoked, about $0.0003 per session on Opus 5.5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-31.

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