BbgnsurfTech/claude-skills-collection

BbgnsurfTech/claude-skills-collection

Skill Claude CodeCodex

Comprehensive Scrum Master assistant for sprint planning, backlog grooming, retrospectives, capacity planning, and daily standups with intelligent context-aware reporting.

BbgnsurfTech/claude-skills-collection

Skill Claude CodeCodex

Generate custom Claude Code slash commands through intelligent 5-7 question flow. Creates powerful commands for business research, content analysis, healthcare compliance, API integration, documentation automation, and workflow optimization. Outputs organized commands to generated-commands/ with validation and…

BbgnsurfTech/claude-skills-collection

Skill Claude CodeCodex

Analyzes social media campaign performance across platforms with engagement metrics, ROI calculations, and audience insights for data-driven marketing decisions.

BbgnsurfTech/claude-skills-collection

Skill Claude CodeCodex

Comprehensive Test Driven Development guide for engineering subagents with multi-framework support, coverage analysis, and intelligent test generation.

BbgnsurfTech/claude-skills-collection

Skill Claude CodeCodex

Comprehensive technology stack evaluation and comparison tool with TCO analysis, security assessment, and intelligent recommendations for engineering teams.

BbgnsurfTech/claude-skills-collection

Skill Claude CodeCodex

Creating interactive data visualisations using d3.js. This skill should be used when creating custom charts, graphs, network diagrams, geographic visualisations, or any complex SVG-based data visualisation that requires fine-grained control over visual elements, transitions, or interactions. Use this for bespoke…

BbgnsurfTech/claude-skills-collection

Skill Claude CodeCodex

Cloud laboratory platform for automated protein testing and validation. Use when designing proteins and needing experimental validation including binding assays, expression testing, thermostability measurements, enzyme activity assays, or protein sequence optimization. Also use for submitting experiments via API…

BbgnsurfTech/claude-skills-collection

Skill Claude CodeCodex

This skill should be used for time series machine learning tasks including classification, regression, clustering, forecasting, anomaly detection, segmentation, and similarity search. Use when working with temporal data, sequential patterns, or time-indexed observations requiring specialized algorithms beyond standard…

BbgnsurfTech/claude-skills-collection

Skill Claude CodeCodex

Access AlphaFold's 200M+ AI-predicted protein structures. Retrieve structures by UniProt ID, download PDB/mmCIF files, analyze confidence metrics (pLDDT, PAE), for drug discovery and structural biology.

BbgnsurfTech/claude-skills-collection

Skill Claude CodeCodex

This skill should be used when working with annotated data matrices in Python, particularly for single-cell genomics analysis, managing experimental measurements with metadata, or handling large-scale biological datasets. Use when tasks involve AnnData objects, h5ad files, single-cell RNA-seq data, or integration with…

BbgnsurfTech/claude-skills-collection

Skill Claude CodeCodex

Infer gene regulatory networks (GRNs) from gene expression data using scalable algorithms (GRNBoost2, GENIE3). Use when analyzing transcriptomics data (bulk RNA-seq, single-cell RNA-seq) to identify transcription factor-target gene relationships and regulatory interactions. Supports distributed computation for…

BbgnsurfTech/claude-skills-collection

Skill Claude CodeCodex

Comprehensive Python library for astronomy and astrophysics. This skill should be used when working with astronomical data including celestial coordinates, physical units, FITS files, cosmological calculations, time systems, tables, world coordinate systems (WCS), and astronomical data analysis. Use when tasks involve…

BbgnsurfTech/claude-skills-collection

Skill Claude CodeCodex

Benchling R&D platform integration. Access registry (DNA, proteins), inventory, ELN entries, workflows via API, build Benchling Apps, query Data Warehouse, for lab data management automation.

BbgnsurfTech/claude-skills-collection

Skill Claude CodeCodex

Autonomous biomedical AI agent framework for executing complex research tasks across genomics, drug discovery, molecular biology, and clinical analysis. Use this skill when conducting multi-step biomedical research including CRISPR screening design, single-cell RNA-seq analysis, ADMET prediction, GWAS interpretation…

BbgnsurfTech/claude-skills-collection

Skill Claude CodeCodex

Primary Python toolkit for molecular biology. Preferred for Python-based PubMed/NCBI queries (Bio.Entrez), sequence manipulation, file parsing (FASTA, GenBank, FASTQ, PDB), advanced BLAST workflows, structures, phylogenetics. For quick BLAST, use gget. For direct REST API, use pubmed-database.

BbgnsurfTech/claude-skills-collection

Skill Claude CodeCodex

Efficient database search tool for bioRxiv preprint server. Use this skill when searching for life sciences preprints by keywords, authors, date ranges, or categories, retrieving paper metadata, downloading PDFs, or conducting literature reviews.

BbgnsurfTech/claude-skills-collection

Skill Claude CodeCodex

Primary Python tool for 40+ bioinformatics services. Preferred for multi-database workflows: UniProt, KEGG, ChEMBL, PubChem, Reactome, QuickGO. Unified API for queries, ID mapping, pathway analysis. For direct REST control, use individual database skills (uniprot-database, kegg-database).

BbgnsurfTech/claude-skills-collection

Skill Claude CodeCodex

Access BRENDA enzyme database via SOAP API. Retrieve kinetic parameters (Km, kcat), reaction equations, organism data, and substrate-specific enzyme information for biochemical research and metabolic pathway analysis.

BbgnsurfTech/claude-skills-collection

Skill Claude CodeCodex

Query CZ CELLxGENE Census (61M+ cells). Filter by cell type/tissue/disease, retrieve expression data, integrate with scanpy/PyTorch, for population-scale single-cell analysis.

BbgnsurfTech/claude-skills-collection

Skill Claude CodeCodex

Query ChEMBL's bioactive molecules and drug discovery data. Search compounds by structure/properties, retrieve bioactivity data (IC50, Ki), find inhibitors, perform SAR studies, for medicinal chemistry.

BbgnsurfTech/claude-skills-collection

Skill Claude CodeCodex

Quantum computing framework for building, simulating, optimizing, and executing quantum circuits. Use this skill when working with quantum algorithms, quantum circuit design, quantum simulation (noiseless or noisy), running on quantum hardware (Google, IonQ, AQT, Pasqal), circuit optimization and compilation, noise…

BbgnsurfTech/claude-skills-collection

Skill Claude Code

Comprehensive citation management for academic research. Search Google Scholar and PubMed for papers, extract accurate metadata, validate citations, and generate properly formatted BibTeX entries. This skill should be used when you need to find papers, verify citation information, convert DOIs to BibTeX, or ensure…

BbgnsurfTech/claude-skills-collection

Skill Claude Code

Generate professional clinical decision support (CDS) documents for pharmaceutical and clinical research settings, including patient cohort analyses (biomarker-stratified with outcomes) and treatment recommendation reports (evidence-based guidelines with decision algorithms). Supports GRADE evidence grading…

BbgnsurfTech/claude-skills-collection

Skill Claude Code

Write comprehensive clinical reports including case reports (CARE guidelines), diagnostic reports (radiology/pathology/lab), clinical trial reports (ICH-E3, SAE, CSR), and patient documentation (SOAP, H&P, discharge summaries). Full support with templates, regulatory compliance (HIPAA, FDA, ICH-GCP), and validation…