bioMate-AI/biomate-bioconductor-kb
Skill Claude Code
Current version only works in 'merge' mode: A single table of gene summarizations is generated with one column for each sample file.
not rated 808
+2 2mo ago A 34 tokens
808Stars on the repository
200Mods indexed here, across every type
2mo agoLast push, which is what freshness is scored on
customA LICENSE file GitHub cannot name, so bodies are not copied
bioMate-AI/biomate-bioconductor-kb
Skill Claude Code
This package enables the interpretation and analysis of results from a gene set enrichment analysis using network-based and text-mining approaches. Most enrichment analyses result in large lists of significant gene sets that are difficult to interpret. Tools in this package help build a similarity-based network of…
not rated 808
+2 2mo ago A 0 tokens
bioMate-AI/biomate-bioconductor-kb
Skill Claude Code
SpatialFeatureExperiment (SFE) is a new S4 class for working with spatial single-cell genomics data. The voyager package implements basic exploratory spatial data analysis (ESDA) methods for SFE. Univariate methods include univariate global spatial ESDA methods such as Moran's I, permutation testing for Moran's I, and…
not rated 808
+2 2mo ago A 0 tokens
bioMate-AI/biomate-bioconductor-kb
Skill Claude Code
Zenith performs gene set analysis on the result of differential expression using linear (mixed) modeling with dream by considering the correlation between gene expression traits. This package implements the camera method from the limma package proposed by Wu and Smyth (2012). Zenith is a simple extension of camera to…
not rated 808
+2 2mo ago A 0 tokens
bioMate-AI/biomate-bioconductor-kb
Skill Claude Code
This package provides a client for the Bioconductor AnnotationHub web resource. The AnnotationHub web resource provides a central location where genomic files (e.g., VCF, bed, wig) and other resources from standard locations (e.g., UCSC, En.
not rated 808
+2 2mo ago A 59 tokens
bioMate-AI/biomate-bioconductor-kb
Skill Claude Code
Classes and statistical methods for large SNP association studies. This extends the earlier snpMatrix package, allowing for uncertainty in genotypes.
not rated 808
+2 2mo ago A 33 tokens
bioMate-AI/biomate-bioconductor-kb
Skill Claude Code
Annotate variants, compute amino acid coding changes, predict coding outcomes.
not rated 808
+2 2mo ago A 21 tokens
bioconductor-vsn
200bioMate-AI/biomate-bioconductor-kb
Skill Claude Code
The package implements a method for normalising microarray intensities from single- and multiple-color arrays. It can also be used for data from other technologies, as long as they have similar format. The method uses a robust variant of th.
not rated 808
+2 2mo ago A 53 tokens
At most 3 mods per repository are shown here, and a mod shipped inside a plugin is left to that plugin's page — the rest are on their repository pages: