BioTender-max/awesome-bio-agent-skills
Skill Claude CodeCodex
Workflow for retrieving public omics datasets, sequences, annotations, and literature-linked biological resources.
not rated 178
+6 2mo ago A 21 tokens
178Stars on the repository
200Mods indexed here, across every type
2mo agoLast push, which is what freshness is scored on
customA LICENSE file GitHub cannot name, so bodies are not copied
ehr-analysis
74BioTender-max/awesome-bio-agent-skills
Skill Claude CodeCodex
End-to-end EHR predictive modeling pipeline with PyHealth, covering dataset loading, task definition, model training, evaluation, calibration, and clinical interpretation.
not rated 178
+6 2mo ago A 33 tokens
BioTender-max/awesome-bio-agent-skills
Skill Claude CodeCodex
End-to-end protein design pipeline guide across preparation, generation, validation, and filtering. Use this skill when: (1) Starting a new protein design project, (2) Need step-by-step workflow guidance, (3) Understanding the full design pipeline, (4) Planning compute resources and timelines, (5) Integrating multiple…
not rated 178
+6 2mo ago A 98 tokens
BioTender-max/awesome-bio-agent-skills
Skill Claude CodeCodex
Workflow for RNA modification analysis such as m6A peak calling, differential modification, and transcript-level visualization.
not rated 178
+6 2mo ago A 27 tokens
BioTender-max/awesome-bio-agent-skills
Skill Claude CodeCodex
ESM2 protein language model for sequence scoring, embeddings, and plausibility checks. Use this skill when: (1) Computing pseudo-log-likelihood (PLL) scores, (2) Getting protein embeddings for clustering, (3) Filtering designs by sequence plausibility, (4) Zero-shot variant effect prediction, (5) Analyzing…
not rated 178
+6 2mo ago A 111 tokens
BioTender-max/awesome-bio-agent-skills
Skill Claude CodeCodex
Workflow for regulatory network inference, regulon scoring, perturbation-aware comparison, and network visualization.
not rated 178
+6 2mo ago A 25 tokens
BioTender-max/awesome-bio-agent-skills
Skill Claude CodeCodex
Workflow for de novo assembly, scaffolding, polishing, contamination review, and assembly QC.
not rated 178
+6 2mo ago A 23 tokens
BioTender-max/awesome-bio-agent-skills
Skill Claude CodeCodex
Workflow for Hi-C and related 3D genomics analyses including compartments, loops, TADs, differential contacts, and visualization.
not rated 178
+6 2mo ago A 35 tokens
BioTender-max/awesome-bio-agent-skills
Skill Claude CodeCodex
Workflow for multiplexed imaging or IMC segmentation, phenotyping, and spatial summarization.
not rated 178
+6 2mo ago A 26 tokens
BioTender-max/awesome-bio-agent-skills
Skill Claude CodeCodex
Workflow for nanopore or PacBio long-read QC, alignment, polishing, methylation-aware analysis, and structural variant discovery.
not rated 178
+6 2mo ago A 30 tokens
BioTender-max/awesome-bio-agent-skills
Skill Claude CodeCodex
Workflow for predictive modeling, biomarker discovery, survival modeling, and explainability over omics-derived features.
not rated 178
+6 2mo ago A 27 tokens
metabolomics
84BioTender-max/awesome-bio-agent-skills
Skill Claude CodeCodex
Workflow for untargeted or targeted metabolomics including preprocessing, normalization, annotation, statistics, and pathway mapping.
not rated 178
+6 2mo ago A 26 tokens
BioTender-max/awesome-bio-agent-skills
Skill Claude CodeCodex
Workflow for methylation alignment or calling, DMR analysis, methylation QC, and locus-level interpretation.
not rated 178
+6 2mo ago A 26 tokens
BioTender-max/awesome-bio-agent-skills
Skill Claude CodeCodex
Workflow for amplicon microbiome analysis including denoising, taxonomy assignment, diversity analysis, and differential abundance.
not rated 178
+6 2mo ago A 31 tokens
BioTender-max/awesome-bio-agent-skills
Skill Claude CodeCodex
Workflow for integrating matched or partially matched omics layers into shared latent structure and cross-modal interpretation.
not rated 178
+6 2mo ago A 25 tokens
BioTender-max/awesome-bio-agent-skills
Skill Claude CodeCodex
Workflow for paired or integrated single-cell RNA and ATAC analysis with multimodal latent spaces and regulatory interpretation.
not rated 178
+6 2mo ago A 27 tokens
BioTender-max/awesome-bio-agent-skills
Skill Claude CodeCodex
Workflow for outbreak-style pathogen genomics, surveillance, lineage assignment, and transmission-oriented comparative analysis.
not rated 178
+6 2mo ago A 26 tokens
BioTender-max/awesome-bio-agent-skills
Skill Claude CodeCodex
Workflow for enrichment testing, ranked-gene analysis, pathway scoring, and pathway-focused visualization across omics outputs.
not rated 178
+6 2mo ago A 26 tokens
BioTender-max/awesome-bio-agent-skills
Skill Claude CodeCodex
Workflow for haplotype phasing, genotype imputation, reference-panel matching, and imputation QC.
not rated 178
+6 2mo ago A 26 tokens
BioTender-max/awesome-bio-agent-skills
Skill Claude CodeCodex
Protein design quality control, filtering thresholds, and ranking guidance. Use this skill when: (1) Evaluating design quality for binding, expression, or structure, (2) Setting filtering thresholds for pLDDT, ipTM, PAE, (3) Checking sequence liabilities (cysteines, deamidation, polybasic clusters), (4) Creating…
not rated 178
+6 2mo ago A 143 tokens
BioTender-max/awesome-bio-agent-skills
Skill Claude CodeCodex
Proteina-Complexa flow-based protein backbone generation with fold-conditioned sampling guidance. Use this skill when: (1) Generating de novo protein backbones with hierarchical fold conditioning, (2) Exploring long-chain backbone generation beyond standard diffusion baselines, (3) Using NVIDIA Proteina-style flow…
not rated 178
+6 2mo ago A 163 tokens
read-qc
94BioTender-max/awesome-bio-agent-skills
Skill Claude CodeCodex
Workflow for sequencing read QC, trimming, contamination screening, and pre-alignment cleanup.
not rated 178
+6 2mo ago A 21 tokens
BioTender-max/awesome-bio-agent-skills
Skill Claude CodeCodex
Workflow for packaging analysis outputs into reproducible reports, clean tables, and publication-ready figure exports.
not rated 178
+6 2mo ago A 26 tokens
ribo-seq
96BioTender-max/awesome-bio-agent-skills
Skill Claude CodeCodex
Workflow for ribosome profiling, P-site aware preprocessing, periodicity checks, ORF detection, and translation efficiency analysis.
not rated 178
+6 2mo ago A 29 tokens
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