crazymsn/academic-skills

Deep Cloud Creation Technology, focused on developing AI agents and AI applications to assist with research, work, and learning!

22Stars on the repository
139Mods indexed here, across every type
3mo agoLast push, which is what freshness is scored on
MITLicence, which decides whether bodies are shown

infographics

49

crazymsn/academic-skills

Skill Claude Code

Create professional infographics using Nano Banana Pro AI with smart iterative refinement. Uses Gemini 3 Pro for quality review. Integrates research-lookup and web search for accurate data. Supports 10 infographic types, 8 industry styles, and colorblind-safe palettes.

not rated 22 3mo ago A 55 tokens copy · 100% MIT

crazymsn/academic-skills

Skill Claude CodeCodex

Comprehensive toolkit for preparing ISO 13485 certification documentation for medical device Quality Management Systems. Use when users need help with ISO 13485 QMS documentation, including (1) conducting gap analysis of existing documentation, (2) creating Quality Manuals, (3) developing required procedures and work…

not rated 22 3mo ago A 126 tokens copy · 97% MIT

crazymsn/academic-skills

Skill Claude CodeCodex

Electronic lab notebook API integration. Access notebooks, manage entries/attachments, backup notebooks, integrate with Protocols.io/Jupyter/REDCap, for programmatic ELN workflows.

not rated 22 3mo ago A 41 tokens copy · 98% MIT

lamindb

52

crazymsn/academic-skills

Skill Claude CodeCodex

This skill should be used when working with LaminDB, an open-source data framework for biology that makes data queryable, traceable, reproducible, and FAIR. Use when managing biological datasets (scRNA-seq, spatial, flow cytometry, etc.), tracking computational workflows, curating and validating data with biological…

not rated 22 3mo ago A 135 tokens copy · 91% MIT

crazymsn/academic-skills

Skill Claude CodeCodex

Latch platform for bioinformatics workflows. Build pipelines with Latch SDK, @workflow/@task decorators, deploy serverless workflows, LatchFile/LatchDir, Nextflow/Snakemake integration.

not rated 22 3mo ago A 45 tokens copy · 91% MIT

latex-posters

54

crazymsn/academic-skills

Skill Claude Code

Create professional research posters in LaTeX using beamerposter, tikzposter, or baposter. Support for conference presentations, academic posters, and scientific communication. Includes layout design, color schemes, multi-column formats, figure integration, and poster-specific best practices for visual communication.

not rated 22 3mo ago A 60 tokens copy · 97% MIT

literature-review

55

crazymsn/academic-skills

Skill Claude Code

Conduct comprehensive, systematic literature reviews using multiple academic databases (PubMed, arXiv, bioRxiv, Semantic Scholar, etc.). This skill should be used when conducting systematic literature reviews, meta-analyses, research synthesis, or comprehensive literature searches across biomedical, scientific, and…

not rated 22 3mo ago C 86 tokens copy · 98% MIT

crazymsn/academic-skills

Skill Claude Code

Comprehensive markdown and Mermaid diagram writing skill. Use when creating any scientific document, report, analysis, or visualization. Establishes text-based diagrams as the default documentation standard with full style guides (markdown + mermaid), 24 diagram type references, and 9 document templates.

not rated 22 3mo ago A 60 tokens copy · 98% MIT

crazymsn/academic-skills

Skill Claude Code needs its repo

Generate comprehensive market research reports (50+ pages) in the style of top consulting firms (McKinsey, BCG, Gartner). Features professional LaTeX formatting, extensive visual generation with scientific-schematics and generate-image, deep integration with research-lookup for data gathering, and multi-framework…

not rated 22 3mo ago A 89 tokens copy · 98% MIT

markitdown

58

crazymsn/academic-skills

Skill Claude Code

Convert files and office documents to Markdown. Supports PDF, DOCX, PPTX, XLSX, images (with OCR), audio (with transcription), HTML, CSV, JSON, XML, ZIP, YouTube URLs, EPubs and more.

not rated 22 3mo ago B 53 tokens copy · 98% MIT

matchms

59

crazymsn/academic-skills

Skill Claude CodeCodex

Spectral similarity and compound identification for metabolomics. Use for comparing mass spectra, computing similarity scores (cosine, modified cosine), and identifying unknown compounds from spectral libraries. Best for metabolite identification, spectral matching, library searching. For full LC-MS/MS proteomics…

not rated 22 3mo ago A 62 tokens copy · 92% MIT

matlab

60

crazymsn/academic-skills

Skill Claude CodeCodex

MATLAB and GNU Octave numerical computing for matrix operations, data analysis, visualization, and scientific computing. Use when writing MATLAB/Octave scripts for linear algebra, signal processing, image processing, differential equations, optimization, statistics, or creating scientific visualizations. Also use when…

not rated 22 3mo ago B 93 tokens copy · 92% MIT

matplotlib

61

crazymsn/academic-skills

Skill Claude CodeCodex

Low-level plotting library for full customization. Use when you need fine-grained control over every plot element, creating novel plot types, or integrating with specific scientific workflows. Export to PNG/PDF/SVG for publication. For quick statistical plots use seaborn; for interactive plots use plotly; for…

not rated 22 3mo ago A 77 tokens copy · 88% MIT

medchem

62

crazymsn/academic-skills

Skill Claude CodeCodex

Medicinal chemistry filters. Apply drug-likeness rules (Lipinski, Veber), PAINS filters, structural alerts, complexity metrics, for compound prioritization and library filtering.

not rated 22 3mo ago A 39 tokens copy · 95% MIT

modal

63

crazymsn/academic-skills

Skill Claude CodeCodex

Cloud computing platform for running Python on GPUs and serverless infrastructure. Use when deploying AI/ML models, running GPU-accelerated workloads, serving web endpoints, scheduling batch jobs, or scaling Python code to the cloud. Use this skill whenever the user mentions Modal, serverless GPU compute, deploying ML…

not rated 22 3mo ago A 123 tokens copy · 81% MIT

molecular-dynamics

64

crazymsn/academic-skills

Skill Claude CodeCodex

Run and analyze molecular dynamics simulations with OpenMM and MDAnalysis. Set up protein/small molecule systems, define force fields, run energy minimization and production MD, analyze trajectories (RMSD, RMSF, contact maps, free energy surfaces). For structural biology, drug binding, and biophysics.

not rated 22 3mo ago A 67 tokens copy · 98% MIT

molfeat

65

crazymsn/academic-skills

Skill Claude CodeCodex

Molecular featurization for ML (100+ featurizers). ECFP, MACCS, descriptors, pretrained models (ChemBERTa), convert SMILES to features, for QSAR and molecular ML.

not rated 22 3mo ago A 47 tokens copy · 91% MIT

networkx

66

crazymsn/academic-skills

Skill Claude CodeCodex

Comprehensive toolkit for creating, analyzing, and visualizing complex networks and graphs in Python. Use when working with network/graph data structures, analyzing relationships between entities, computing graph algorithms (shortest paths, centrality, clustering), detecting communities, generating synthetic networks…

not rated 22 3mo ago A 85 tokens copy · 81% MIT

neurokit2

67

crazymsn/academic-skills

Skill Claude CodeCodex

Comprehensive biosignal processing toolkit for analyzing physiological data including ECG, EEG, EDA, RSP, PPG, EMG, and EOG signals. Use this skill when processing cardiovascular signals, brain activity, electrodermal responses, respiratory patterns, muscle activity, or eye movements. Applicable for heart rate…

not rated 22 3mo ago A 96 tokens copy · 98% MIT

crazymsn/academic-skills

Skill Claude CodeCodex

Neuropixels neural recording analysis. Load SpikeGLX/OpenEphys data, preprocess, motion correction, Kilosort4 spike sorting, quality metrics, Allen/IBL curation, AI-assisted visual analysis, for Neuropixels 1.0/2.0 extracellular electrophysiology. Use when working with neural recordings, spike sorting, extracellular…

not rated 22 3mo ago A 109 tokens copy · 92% MIT

omero-integration

69

crazymsn/academic-skills

Skill Claude CodeCodex

Microscopy data management platform. Access images via Python, retrieve datasets, analyze pixels, manage ROIs/annotations, batch processing, for high-content screening and microscopy workflows.

not rated 22 3mo ago A 39 tokens copy · 95% MIT

open-notebook

70

crazymsn/academic-skills

Skill Claude CodeCodex

Self-hosted, open-source alternative to Google NotebookLM for AI-powered research and document analysis. Use when organizing research materials into notebooks, ingesting diverse content sources (PDFs, videos, audio, web pages, Office documents), generating AI-powered notes and summaries, creating multi-speaker…

not rated 22 3mo ago A 123 tokens copy · 86% MIT

crazymsn/academic-skills

Skill Claude CodeCodex

Official Opentrons Protocol API for OT-2 and Flex robots. Use when writing protocols specifically for Opentrons hardware with full access to Protocol API v2 features. Best for production Opentrons protocols, official API compatibility. For multi-vendor automation or broader equipment control use pylabrobot.

not rated 22 3mo ago A 66 tokens copy · 98% MIT

optimize-for-gpu

72

crazymsn/academic-skills

Skill Claude CodeCodex

GPU-accelerate Python code using CuPy, Numba CUDA, Warp, cuDF, cuML, cuGraph, KvikIO, cuCIM, cuxfilter, cuVS, cuSpatial, and RAFT. Use whenever the user mentions GPU/CUDA/NVIDIA acceleration, or wants to speed up NumPy, pandas, scikit-learn, scikit-image, NetworkX, GeoPandas, or Faiss workloads. Covers physics…

not rated 22 3mo ago A 184 tokens copy · 100% MIT

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