anomaly-analysis

Anomaly Analysis

Identify significant anomalies in a dataset across three layers: value-level, distribution-level, and relational.

Inputs

• Path to a dataset file or folder.
• Optional: timestamp column name (enables temporal anomaly checks).
• Optional: group-by column (for per-segment anomaly detection).

Recommended CLI tooling

• duckdb — percentile, z-score, and windowed queries.
• uv run --with pandas --with scikit-learn python -c '...' — IsolationForest and LOF for multivariate anomalies.
• csvstat (csvkit) — quick min/max/null sanity check.

Procedure

Layer 1 — Value-level sanity

For each column:

• Nulls: count and percentage; flag columns >20% null.
• Duplicates: flag rows duplicated on a natural key, or full-row duplicates.
• Impossible values: negative ages, dates in the future, percentages >100, etc. Use column name hints.
• Type coherence: mixed types in one column (e.g. numbers stored as strings with stray text).

Layer 2 — Distribution-level outliers

For each numeric column:

• IQR method: flag values below Q1 − 1.5·IQR or above Q3 + 1.5·IQR.
• Z-score: flag |z| > 3.
• Top/bottom 5: list the extreme values explicitly so the user can eyeball them.

For categorical columns:

• Rare categories (<1% frequency) — possible typos or data-entry errors.
• Unexpected values outside a known vocabulary (if provided).

Layer 3 — Multivariate and temporal

• IsolationForest on numeric columns → flag rows in the top 1% anomaly score.
• If a timestamp column exists: detect gaps, spikes, and level shifts in row volume over time.
• If a group-by column is provided: re-run Layer 2 within each group — an anomaly in-group may not be one globally.

Output

Write <dataset>-anomalies.md:

1. Summary: one-line severity (low / medium / high) and headline anomaly count.
2. By layer: sections for value-level, distribution, and multivariate.
3. Evidence: concrete example rows (with row numbers / keys) for each flagged anomaly.
4. Recommendations: which anomalies warrant investigation vs. are likely expected tail behaviour.