deephaven-mcp: Skill for Claude Code

Apply the ref-mcp-module-organization skill for module placement, the pydocs-improve skill for docstring requirements (Terminology Note + Format Accuracy for AI Agents), and the ref-output-serialization-conventions skill for the tool's return payload (every string field's value vocabulary, casing, and known carve-outs).

Steps

1. Pick the module. Look in src/deephaven_mcp/mcp_systems_server/_tools/ for an existing domain that fits (session.py, table.py, script.py, session_community.py, session_enterprise.py, catalog.py, pq.py). Only create a new module if the tool represents a genuinely new domain. Module size follows from that rule — one domain per module — not from a line target. For how the tool packages relate to the rest of the tree, see ref-project-reference; if you add a module, update its map in the same changeset.
2. Write the tool function. Async, takes context: Context first, returns a dict. No @server.tool() decorator on the function itself — registration is explicit (see step 4).
3. Write the docstring. AI agents see only the docstring; be specific about parameters, return shape, and errors. Apply the pydocs-improve skill — including the canonical "Terminology Note" and (if the tool returns tabular data with a format parameter) "Format Accuracy for AI Agents" sections.
4. Register the tool. Add server.tool()(my_tool) inside the module's register_tools(server: FastMCP) -> None. If you created a new module, also add module.register_tools(server) to _register_tools() in src/deephaven_mcp/mcp_systems_server/_fastmcp.py. This is the most commonly forgotten step — without it the tool is invisible to clients.
5. Add helpers with a leading underscore. Place them in the same module unless used by 3+ modules, in which case promote to _tools/shared.py.
6. Add logging. Apply the ref-logging-standards skill: log entry, success, and the failure path for the tool in its canonical message format; never log secrets.
7. Add tests. A new tool gets its own test cases covering the happy path, error paths, and any session-id parsing. Apply the tests-improve skill for coverage targets.
8. Update the capability list. Add the tool to the Available MCP Tools list in README.md (one line: name + one-line purpose). The docstring from step 3 is the tool's reference — no other doc needs a per-tool entry. Update docs/CONFIGURATION.md only if the tool adds a configuration field.
9. Run run-precommit and tests-run-file on the changed test files, then tests-run for a full-suite check.