Getting it into your agent
One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.
npx agentmods add skills/dojogenesis/mcp/semantic-clustersnpx skills add DojoGenesis/mcp --skill semantic-clustersgit clone --depth 1 https://github.com/DojoGenesis/mcpWrote this? Show the measurements
A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.
[](https://agentmods.dev/skills/dojogenesis/mcp/semantic-clusters)<a href="https://agentmods.dev/skills/dojogenesis/mcp/semantic-clusters"><img src="https://agentmods.dev/badge/skills/dojogenesis/mcp/semantic-clusters.svg" alt="Measured on agentmods" height="20"></a>What it costs to keep this loaded
Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.
| Model | Per session | Once invoked |
|---|---|---|
| Fable 5 | $0.00129 | $0.03322 |
| Opus 5 | $0.00064 | $0.01661 |
| Sonnet 5 | $0.00026 | $0.00664 |
| Haiku 4.5 | $0.00013 | $0.00332 |
Grade A, and why
semantic-clusters scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 3d ago.
A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.
Nothing flagged
None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.
How it starts
The opening of the file, as written. The whole thing — 273 lines — stays where its author put it; the contents beside it link to each section on GitHub.
Semantic Clusters Skill
Version: 1.0 Created: 2026-02-11 Purpose: Map software systems by behavioral capabilities using action-verb clusters, revealing what a system does rather than where its files live.
I. The Philosophy: Behavior Over Location
Every codebase has two architectures:
- The filesystem architecture -- where files live. Directories, packages, modules. This is what
lsshows you. - The behavioral architecture -- what the system does. Capabilities that cross-cut directories, features that span layers.
Most people only see architecture #1. They think in terms of frontend/, backend/, utils/. But understanding comes from architecture #2 -- the verbs.
A "chat" feature isn't in one directory. It's a component in the frontend, a handler in the backend, a state engine in a context, a streaming service, an SSE connection, and a set of tools. These parts live in 6 different directories. But they all serve one verb: CONVERSE.
Semantic clusters make the behavioral architecture visible. Each cluster is named with an action verb, and every significant component in the codebase maps to one (sometimes two) clusters. The result is a map of what the system can do -- not just where its files happen to be.
This distinction matters because:
- Refactoring within a cluster is safer than refactoring across clusters. Components in the same cluster share a purpose; changing them together makes sense.
- Gaps become visible. If you have PERSIST but no PROTECT, you're storing data without security boundaries.
- Coupling is explicit. Cross-cluster components are integration points where changes propagate. You can see them in the map instead of discovering them during a production incident.
- Onboarding improves. "Let me explain what this system can DO" is a better orientation than "let me show you the directory tree."
II. When to Use This Skill
- Exploring a new codebase: Before diving into files, map the behavioral capabilities to build your mental model.
- Explaining a system: Clusters make better explanations than directory trees because they answer "what does it do?" not "where are the files?"
- Planning a refactor: Clusters reveal which components serve the same capability. Refactoring within a cluster is safer than across clusters.
- Auditing feature coverage: Clusters expose gaps -- capabilities the system lacks or has only partially implemented.
- Identifying architectural confusion: If a component maps to 3+ clusters, it's probably doing too much. If a directory has components in 5 different clusters, it may need restructuring.
- Writing status documents: The behavioral architecture section of a STATUS.md uses clusters.
- Sprint planning: Assign work by cluster. "This sprint we're focused on OBSERVE and PRESENT."
- Code review: Ask "which clusters does this PR touch?" A PR that modifies 4+ clusters deserves extra scrutiny.
- Technical debt tracking: Rate each cluster's health independently. Focus debt reduction on unhealthy clusters.
What this file has done since we first saw it
Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.
- 3d ago First seen · 273 lines · 129 tokens per session scan A cfbeb0585273
semantic-clusters is a skill published in the GitHub repository DojoGenesis/mcp (0 stars, last pushed 1mo ago), licensed MIT. It adds 129 tokens to every session and 3,322 once invoked, about $0.0006 per session on Opus 5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-31.
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