gitnexus-cli

A command-line tool for analyzing a code repository and building a searchable map of how its code is connected.

In plain words
What is it for?
Use it to analyze a repository, check its index status, clean the index, generate a wiki, or list indexed repositories.
Why use it?
It gives developers a way to refresh or inspect the repository's code index before exploring the codebase.

Skill for Claude CodeCodex

Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

agentmods
npx agentmods add skills/douglasmonsky/codex-usage-tracker/gitnexus-cli
Any agent
npx skills add douglasmonsky/codex-usage-tracker --skill gitnexus-cli
Clone the repo
git clone --depth 1 https://github.com/douglasmonsky/codex-usage-tracker

Made for: Claude Code, Codex.

Per session 59 Skills are progressive disclosure: only the name and description are preloaded; the body loads when the skill is used.
When invoked 1,225 The whole file, excluding the scripts and references it only reads on demand.
Security scan A 0 findings. Scan, not verified.
Origin 83% copy Near-identical to another mod in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5 $0.00059 $0.01225
Opus 5 $0.00030 $0.00613
Sonnet 5 $0.00012 $0.00245
Haiku 4.5 $0.00006 $0.00122

Measured yesterday against content hash 0056cabd03c7, method: parsed. Prices are Anthropic first-party input rates as of 2026-08-30, from the pricing page.

Security

Grade A, and why

gitnexus-cli scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured yesterday.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

Origin

This is a copy

83% identical to gitnexus-cli — 35 lines differ, which has more behind it and is treated as the original. This page carries a canonical link to it rather than competing with it.

.claude/skills/gitnexus/gitnexus-cli/SKILL.md · 100 lines

How it starts

The opening of the file, as written. The whole thing — 100 lines — stays where its author put it; the contents beside it link to each section on GitHub.

GitNexus CLI Commands

Commands below use node .gitnexus/run.cjs <command> — the project-local runner gitnexus analyze drops next to the index. It auto-selects an available runner at call time (global gitnexus, else pnpm dlx, else npx), so no package-manager assumption and no global install is required.

Not analyzed yet, or node .gitnexus/run.cjs reports Cannot find module (the gitignored runner is absent — e.g. a fresh clone or git clean)? Build only the local index with npx gitnexus analyze --index-only . from the project root. On npm 11.x, if npx crashes during install (node.target is null), install once with npm i -g gitnexus (then gitnexus analyze --index-only .) or use pnpm --allow-build=@ladybugdb/core --allow-build=gitnexus --allow-build=tree-sitter dlx gitnexus@latest analyze --index-only .. See #1939.

Commands

analyze — Build or refresh the index

node .gitnexus/run.cjs analyze --index-only .

Run from the project root. This parses source files, builds the knowledge graph, and writes it to .gitnexus/ without modifying repository guidance.

Flag Effect
--force Force full re-index even if up to date
--embeddings Enable embedding generation for semantic search (off by default)
--drop-embeddings Drop existing embeddings on rebuild. By default, an analyze without --embeddings preserves them.
--pdg Build the program-dependence layers used by explain and pdg_query (taint, CDG, and REACHING_DEF).
--index-only Refresh only the graph; do not rewrite agent guidance or repo-local skills.

Read the full file on GitHub · 100 lines

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. yesterday First seen · 100 lines · 59 tokens per session scan A 0056cabd03c7

Subscribe to this mod's changes

gitnexus-cli is a skill published in the GitHub repository douglasmonsky/codex-usage-tracker (193 stars, last pushed 11d ago), licensed MIT. It adds 59 tokens to every session and 1,225 once invoked, about $0.0003 per session on Opus 5. A static security scan graded it A with 0 findings. It is 83% identical to gitnexus-cli, differing in 35 lines, and is treated as a copy.

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