Drchronx/ai-agent-research-starter-kit

Drchronx/ai-agent-research-starter-kit

Skill Codex

Design online or pseudo-online BCI decoding workflows. Use for sliding windows, real-time inference, latency, calibration, feedback, adaptive thresholds, stream processing, online metrics, offline-to-online gap, and deployment safety.

Drchronx/ai-agent-research-starter-kit

Skill Codex

Write BCI and EEG machine-learning results for papers. Use for subject-wise performance tables, accuracy, balanced accuracy, AUC, F1, confusion matrix, ITR, confidence intervals, permutation tests, baseline comparison, leakage disclosure, model architecture table, and BCI manuscript reporting.

Drchronx/ai-agent-research-starter-kit

Skill Codex

Plan cross-subject, cross-session, transfer-learning, domain-adaptation, and few-shot BCI workflows. Use for subject-independent EEG decoding, leave-one-subject-out validation, calibration, alignment, CORAL, Riemannian alignment, adversarial domain adaptation, and transfer evaluation.

Drchronx/ai-agent-research-starter-kit

Skill Codex

Design EEG deep-learning workflows for BCI and neural decoding. Use for EEGNet, DeepConvNet, ShallowConvNet, CNN-LSTM, TCN, Transformer, self-supervised EEG models, data augmentation, subject-independent training, training logs, regularization, and deep model reporting.

Drchronx/ai-agent-research-starter-kit

Skill Codex

Create EEG/BCI feature-engineering plans. Use for band power, PSD, ERP features, CSP, FBCSP, Riemannian covariance features, connectivity features, time-window features, normalization, feature scaling, and feature extraction inside cross-validation.

Drchronx/ai-agent-research-starter-kit

Skill Codex

Build classical machine-learning workflows for EEG/BCI classification and regression. Use for LDA, logistic regression, SVM, random forest, XGBoost, CSP+LDA, FBCSP, Riemannian classifiers, calibration, hyperparameter tuning, and baseline BCI models.

Drchronx/ai-agent-research-starter-kit

Skill Codex

Audit EEG/BCI model evaluation and prevent data leakage. Use for subject-wise splits, session-wise splits, trial-window leakage, nested cross-validation, permutation tests, confidence intervals, chance level, repeated runs, class imbalance, and reproducible EEG ML evaluation.

Drchronx/ai-agent-research-starter-kit

Skill Codex

Interpret EEG/BCI machine-learning and deep-learning models. Use for spatial patterns, CSP patterns, saliency maps, frequency importance, temporal importance, SHAP, permutation importance, topographies, model explanation limits, and neural interpretation cautions.

Drchronx/ai-agent-research-starter-kit

Skill Codex

Track data lineage and reproducibility for academic projects. Use for raw-to-processed data flow, data cleaning logs, script-to-output mapping, analysis provenance, dataset versioning, data dictionaries, non-overwrite raw data rules, and reproducibility audit trails.

Drchronx/ai-agent-research-starter-kit

Skill Codex

Manage academic manuscript versions and revision history. Use for manuscriptversions.md, version naming, draft comparison, change summaries, manuscript milestones, version logs, figure/table versioning, and paper draft continuity.

Drchronx/ai-agent-research-starter-kit

Skill Codex

Maintain a research project dashboard and status summary. Use for projectstatus.md, current research question, completed tasks, blockers, next actions, active files, current manuscript version, experiment status, data status, and weekly research dashboard updates.

Drchronx/ai-agent-research-starter-kit

Skill Codex

Initialize a structured academic research project workspace. Use for creating doctoral project folders, AGENTS.md, project dashboard, literature/data/analysis/manuscript/submission/log directories, research project templates, and reproducible project scaffolds for papers, experiments, EEG/BCI projects, or…

Drchronx/ai-agent-research-starter-kit

Skill Codex

Maintain research logs and decision records for academic projects. Use for researchlog.md, experiment logs, modeling decisions, literature decisions, analysis decisions, daily work records, decision rationale, output file inventory, and reproducibility notes.

Drchronx/ai-agent-research-starter-kit

Skill Codex

Track journal submission, reviewer comments, revisions, and response letters. Use for submissiontracker.csv, target journal pipeline, desk reject risk, reviewer comment extraction, response letter task table, revision status, resubmission checklist, and publication workflow management.

Drchronx/ai-agent-research-starter-kit

Skill Codex

Create weekly research plans and reviews for doctoral projects. Use for weeklyplan.md, weeklyreview.md, priority setting, task dependencies, research sprint planning, meeting preparation, advisor questions, and project continuity.

Drchronx/ai-agent-research-starter-kit

Skill Claude CodeCodex

Create Obsidian paper cards from Zotero items, PDFs, annotations, abstracts, or literature notes. Use for Markdown note templates, YAML frontmatter, backlinks, tags, literature summaries, theory-method-result extraction, and turning each paper into a reusable permanent note.

Drchronx/ai-agent-research-starter-kit

Skill Claude CodeCodex

Extract and maintain reusable insights from each paper for long-term research ideation. Use for turning papers into idea cards, reusable theory mechanisms, variable definitions, stimuli, measures, datasets, analysis strategies, limitations, reviewer-risk notes, and future-study opportunities.

Drchronx/ai-agent-research-starter-kit

Skill Claude CodeCodex

Build a research question knowledge graph from papers, theories, variables, methods, datasets, authors, venues, and projects. Use for Obsidian backlinks, Mermaid graph output, knowledge-map design, research gap detection, literature-tree building, and linking Zotero papers to research questions.

Drchronx/ai-agent-research-starter-kit

Skill Claude CodeCodex

Build and maintain a theory-variable-method matrix from papers, Zotero metadata, Obsidian paper cards, and research notes. Use for mapping theories to constructs, variables, measurements, experimental designs, EEG/ERP/BCI methods, text-mining methods, causal designs, and manuscript evidence tables.

Drchronx/ai-agent-research-starter-kit

Skill Claude CodeCodex

Synchronize and audit a Zotero literature library for long-term research knowledge management. Use for Zotero Web API or local read-only access, pyzotero workflows, collection design, tag taxonomy, metadata cleanup, PDF attachment status, BibTeX export, DOI checks, and syncing Zotero items into an Obsidian-ready paper…