notebook-hygiene

notebook-hygiene is a skill for Claude Code, Codex from emcd/nb-mcp-server. It costs 44 tokens per session (1,338 once invoked), scanned A, original, Apache-2.0.

A workflow for auditing, cleaning, or reorganizing one named project notebook while preserving active work and important records.

In plain words
What is it for?
Reviewing notebook folders and notes, sorting stale or active material, applying requested cleanup, and checking the result with notebook tools.
Why use it?
It avoids accidental loss by requiring an inventory first and limiting cleanup to clearly justified changes.

Skill for Claude CodeCodex

Written for no agent in particular: nothing here depends on one. Also seen: mentions AGENTS.md.

Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

agentmods
npx agentmods add skills/emcd/nb-mcp-server/notebook-hygiene
Any agent
npx skills add emcd/nb-mcp-server --skill notebook-hygiene
Clone the repo
git clone --depth 1 https://github.com/emcd/nb-mcp-server

Made for: Claude Code, Codex.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for notebook-hygiene

README.md
[![agentmods](https://agentmods.dev/badge/skills/emcd/nb-mcp-server/notebook-hygiene.svg)](https://agentmods.dev/skills/emcd/nb-mcp-server/notebook-hygiene)
Your own site
<a href="https://agentmods.dev/skills/emcd/nb-mcp-server/notebook-hygiene"><img src="https://agentmods.dev/badge/skills/emcd/nb-mcp-server/notebook-hygiene.svg" alt="Measured on agentmods" height="20"></a>
Per session 44 Skills are progressive disclosure: only the name and description are preloaded; the body loads when the skill is used.
When invoked 1,338 The whole file, excluding the scripts and references it only reads on demand.
Security scan A 0 findings. Scan, not verified.
Origin original No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.00044 $0.01338
Opus 5 $0.00022 $0.00669
Sonnet 5 $0.00009 $0.00268
Haiku 4.5 $0.00004 $0.00134

Measured 5d ago against content hash 4c113d80b0d3, method: parsed. Prices are Anthropic first-party input rates as of 2026-09-06, from the pricing page.

Security

Grade A, and why

notebook-hygiene scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 5d ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

.auxiliary/configuration/coders/opencode/skills/notebook-hygiene/SKILL.md · 137 lines

How it starts

The opening of the file, as written. The whole thing — 137 lines — stays where its author put it; the contents beside it link to each section on GitHub.

Notebook Hygiene

Purpose

Restore a project notebook to a small, predictable working set without losing active work, durable rationale, or lifecycle-managed records. Treat cleanup as an information-architecture task, not a bulk deletion exercise.

Entry Conditions

  1. Identify one explicit target notebook. If the user did not name one, ask before continuing.
  2. Read the repository instructions and local notebook guidance first. Prefer AGENTS.md, the root README, and files such as documentation/agents/notebook.md when present.
  3. Use the nb MCP tools for notebook operations. Notebook selectors are not repository filesystem paths.
  4. Do not inspect or modify other notebooks merely because the target notebook references them.
  5. If the user requested an audit or assessment, do not mutate anything. If the user explicitly requested cleanup, apply only unambiguous changes and present ambiguous cases together for a decision.

For a non-trivial cleanup, track the audit, classification, mutation, and verification phases with the session task-list tool.

Audit

Build the inventory before changing anything:

  1. List top-level folders and root-level items.
  2. List child folders and their contents. Follow the depth allowed by local policy; do not assume every notebook uses the same component names.
  3. Inventory open and completed todos. Confirm todo state from [ ] and [x] rather than decorative item glyphs.
  4. Inspect candidate stale records, including old handoffs, completed reviews, resolved issues, session notes, test notes, root-level notes, and duplicated trackers.
  5. Search for status tags, old selectors, references to completed trackers, and notes hidden at a category root alongside component subfolders.
  6. Read each candidate before classifying it. Titles and age alone are not enough evidence for deletion.

Classify each candidate into one of these groups:

Class Treatment
Active Keep in the local issue-type/component taxonomy.
Lifecycle-managed Leave in place and use its owning workflow or CLI.
Durable history Move to artifacts/<component> or the local equivalent.
Procedure Move to procedures/<component> or the local equivalent.
Completed Delete when the outcome is preserved in code, tests, releases, or durable documentation.
Stale or duplicate Delete after confirming that no unique action or rationale remains.
Ambiguous Preserve and ask one bundled clarification question.

Read the full file on GitHub · 137 lines

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 5d ago First seen · 137 lines · 44 tokens per session scan A 4c113d80b0d3

Subscribe to this mod's changes

notebook-hygiene is a skill published in the GitHub repository emcd/nb-mcp-server (1 stars, last pushed 22d ago), licensed Apache-2.0. It adds 44 tokens to every session and 1,338 once invoked, about $0.0002 per session on Opus 5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-31.