Getting it into your agent
One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.
npx agentmods add skills/fredoliveira/agents/index-atomic-notesnpx skills add fredoliveira/agents --skill index-atomic-notesgit clone --depth 1 https://github.com/fredoliveira/agentsWrote this? Show the measurements
A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.
[](https://agentmods.dev/skills/fredoliveira/agents/index-atomic-notes)<a href="https://agentmods.dev/skills/fredoliveira/agents/index-atomic-notes"><img src="https://agentmods.dev/badge/skills/fredoliveira/agents/index-atomic-notes.svg" alt="Measured on agentmods" height="20"></a>What it costs to keep this loaded
Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.
| Model | Per session | Once invoked |
|---|---|---|
| Fable 5 | $0.00024 | $0.00700 |
| Opus 5 | $0.00012 | $0.00350 |
| Sonnet 5 | $0.00005 | $0.00140 |
| Haiku 4.5 | $0.00002 | $0.00070 |
Grade A, and why
index-atomic-notes scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 4d ago.
A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.
Nothing flagged
None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.
How it starts
The opening of the file, as written. The whole thing — 106 lines — stays where its author put it; the contents beside it link to each section on GitHub.
Atomic note indexer
Purpose
Integrate a new atomic note into the knowledge graph by:
- Filing it under relevant topic maps of content (MOCs)
- Discovering and creating meaningful connections to other atomic notes
Instructions
1. Understand existing topics
Browse the Topics/ folder to understand what maps of content already exist and what subjects they cover.
2. File the note under relevant topics
If the note fits existing topics:
- Add a link to the atomic note in the appropriate section of each relevant MOC
- Add those topics to the note's frontmatter
topicsproperty
If no suitable topic exists:
- Ask the user whether to create a new topic or leave the note unindexed for now
3. Find connections to other atomic notes
- Start by exploring notes already linked from the relevant topics
- Identify notes that relate meaningfully to the new one
- Always ask the user before modifying other notes
Preserving Atomicity When Cross-Linking
Each atomic note should contain a single, focused insight. Cross-links must enhance without diluting.
Principles
| Do | Don't |
|---|---|
| Add brief links that provide nuance | Add explanatory text that expands the scope |
| Suggest connections to the user | Modify notes without permission |
| Preserve the original focus | Turn notes into discussion hubs |
Self-check before adding a link
- Does the note title still capture the complete insight?
- Could a reader understand the core idea from the title and first paragraph alone?
- Am I changing what this note is fundamentally about?
If the answer to the last question is "yes", suggest the link to the user instead of adding it.
Examples
Good cross-link — adds nuance to existing insight:
Original: "Large language models understand concepts" Addition: "However, [[Performance depends on verifiability]], which means they show stronger capabilities on verifiable tasks."
What this file has done since we first saw it
Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.
- 4d ago First seen · 106 lines · 24 tokens per session scan A 7f420e87bb61
index-atomic-notes is a skill published in the GitHub repository fredoliveira/agents (24 stars, last pushed 2mo ago), licensed MIT. It adds 24 tokens to every session and 700 once invoked, about $0.0001 per session on Opus 5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-30.
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