Skill Claude CodeCodex
Advance the gxformat2 draft by one step: pick the next drafty step, resolve a wrapper, implement the step, and validate.
2 2d ago A 36 tokens
2Stars on the repository
60Mods indexed here, across every type
2d agoLast push, which is what freshness is scored on
noneNo LICENSE: all rights reserved, so bodies are not copied
Skill Claude CodeCodex
Apply a reviewed change-set to a concrete Galaxy workflow: untouched regions preserved, tool-introducing edits injected as drafty steps.
2 2d ago A 36 tokens
Skill Claude CodeCodex
Author a new Galaxy user-defined tool YAML definition when discovery yields nothing acceptable.
2 2d ago A 22 tokens
Skill Claude CodeCodex
Carry an existing Galaxy workflow's tests forward as a regression baseline and augment them for a change-set's deltas, emitting a Galaxy test plan.
2 2d ago A 38 tokens
Skill Claude CodeCodex
Find nearest IWC exemplar(s) and surface a structural diff against the upstream Galaxy design briefs to guide template authoring.
2 2d ago A 33 tokens
Skill Claude CodeCodex
Convert one nf-core module dir into a Galaxy tool wrapper (tool.xml + macros.xml + provenance.yml + remote-URL blocks).
2 2d ago A 43 tokens
Skill Claude CodeCodex
Translate a CWL summary into a Galaxy data-flow design brief.
2 2d ago A 23 tokens
Skill Claude CodeCodex
Map a CWL summary into a Galaxy workflow interface design brief.
2 2d ago A 22 tokens
Skill Claude CodeCodex
Follow the procedure below and use the artifact/reference sections as the runtime contract.
2 2d ago A 29 tokens
Skill Claude CodeCodex
Translate CWL test fixtures into a Galaxy workflow test plan.
2 2d ago A 22 tokens
Skill Claude CodeCodex
Resolve a CWL workflow's own declared test cases into Galaxy workflow test-data refs.
2 2d ago A 23 tokens
Skill Claude CodeCodex
Triage failing CWL run outputs; classify failure modes; propose fixes.
2 2d ago A 22 tokens
Skill Claude CodeCodex
Triage failing Galaxy run outputs; classify the failure surface and capture evidence before recommending repairs.
2 2d ago A 26 tokens
Skill Claude CodeCodex
Search the Tool Shed for an existing wrapper, drill from hit to a pinnable changeset, classify candidates, and recommend or fall through.
2 2d ago A 33 tokens
Skill Claude CodeCodex
Search IWC fixtures and public sources for test data matching a data-flow shape.
2 2d ago A 20 tokens
Skill Claude CodeCodex
Translate a free-form source summary into a CWL workflow design brief.
2 2d ago A 22 tokens
Skill Claude CodeCodex
Translate a free-form source summary into a Galaxy data-flow design brief.
2 2d ago A 24 tokens
Skill Claude CodeCodex
Map a free-form source summary into a Galaxy workflow interface design brief.
2 2d ago A 23 tokens
Skill Claude CodeCodex
Follow the procedure below and use the artifact/reference sections as the runtime contract.
2 2d ago A 28 tokens
Skill Claude CodeCodex
Synthesize a Galaxy workflow test plan from a free-form summary and the Galaxy design briefs.
2 2d ago A 28 tokens
Skill Claude CodeCodex
Convert an abstract step into a concrete CWL CommandLineTool + step.
2 2d ago A 21 tokens
Skill Claude CodeCodex
Assemble CWL job file(s) and expected-output assertions.
2 2d ago A 20 tokens
Skill Claude CodeCodex
Convert an abstract step into a concrete gxformat2 step using a tool summary.
2 2d ago A 23 tokens
Skill Claude CodeCodex
Assemble Galaxy workflow test fixtures and assertions.
2 2d ago A 17 tokens