paper-zotero

paper-zotero is a skill for Claude Code from Geek96/paper-research-skill. It costs 49 tokens per session (455 once invoked), scanned A, original, MIT.

A paper-importing skill that adds academic papers to a Zotero library, a reference manager for research. It accepts DOIs or PDFs, can place papers in a chosen collection, and can index imported PDF text.

In plain words
What is it for?
Use it to import papers from DOI lists, PDFs, or paper-fetch results, assign them to collections, and receive a report of successful and failed imports.
Why use it?
It removes the manual work of copying paper details and attaching files to Zotero. DOI imports can retrieve publication metadata automatically.

Skill for Claude Code

Written for Claude Code: shipped in a Claude Code plugin. Also seen: installed under .agents/ (shared by several agents).

Part of the paper-research-skill plugin — 5 skills shipped together

Good fit Use it to import papers from DOI lists, PDFs, or paper-fetch results, assign them to collections, and receive a report of successful and failed imports.

Compare 6 skills from other repositories ↓
Install with agentmods
npx agentmods add skills/geek96/paper-research-skill/paper-zotero
Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

Any agent
npx skills add Geek96/paper-research-skill --skill paper-zotero
Clone the repo
git clone --depth 1 https://github.com/Geek96/paper-research-skill

Made for: Claude Code.

Or install paper-research-skill, the plugin that ships this one along with the rest of its 5 skills.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for paper-zotero

README.md
[![agentmods](https://agentmods.dev/badge/skills/geek96/paper-research-skill/paper-zotero/github.svg)](https://agentmods.dev/skills/geek96/paper-research-skill/paper-zotero)
Your own site
<a href="https://agentmods.dev/skills/geek96/paper-research-skill/paper-zotero"><img src="https://agentmods.dev/badge/skills/geek96/paper-research-skill/paper-zotero/github.svg" alt="Measured on agentmods" height="20"></a>

Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.

agentmods 80×15 button for paper-zotero

Your own site · 80×15
<a href="https://agentmods.dev/skills/geek96/paper-research-skill/paper-zotero"><img src="https://agentmods.dev/badge/skills/geek96/paper-research-skill/paper-zotero.svg" alt="Reviewed on agentmods" width="80" height="20"></a>
Per session 49 Skills are progressive disclosure: only the name and description are preloaded; the body loads when the skill is used.
When invoked 455 The whole file, excluding the scripts and references it only reads on demand.
Security scan A 0 findings. A grade says what 26 rules found in the file — not that it is safe.
Origin original No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.00049 $0.00455
Opus 5 $0.00024 $0.00228
Sonnet 5 $0.00010 $0.00091
Haiku 4.5 $0.00005 $0.00046

Measured 12d ago against content hash 1df7cd0de509, method: parsed. Prices are Anthropic first-party input rates as of 2026-09-11, from the pricing page.

Security

Grade A, and why

paper-zotero scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 12d ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

.agents/skills/paper-zotero/SKILL.md · 55 lines

What it actually says

Paper Zotero

Overview

Imports selected papers into Zotero via mcp-zotero. Supports DOI-based import (preferred — Zotero auto-fetches full metadata) and PDF import with fulltext indexing. Assigns papers to a specified collection.

Required MCP

Xevos117/mcp-zotero must be installed and configured. See setup guide: https://github.com/Xevos117/mcp-zotero

Input

Accepts paper-fetch output JSON, or ask the user for:

  • PDF file paths and/or DOI list
  • Target Zotero collection name (default: Inbox)

Steps

  1. For each paper in input: a. If DOI available → call zotero_add_by_doi(doi) (Zotero fetches full metadata automatically) b. If only PDF available → call zotero_import_pdf(pdf_path) with fulltext indexing c. Zotero auto-attaches open-access PDF via Unpaywall if available
  2. Assign each imported item to the target collection
  3. Collect returned Zotero item keys
  4. Report summary: "Imported N papers to collection 'Inbox'"

Output

{
  "imported": [
    {
      "title": "Attention Is All You Need",
      "doi": "10.48550/arXiv.1706.03762",
      "zotero_key": "ABC123DE",
      "collection": "Inbox"
    }
  ],
  "failed": []
}

Pass zotero_key values to downstream Obsidian sub-skills so notes can link back to Zotero.

Common Issues

  • Duplicate detection: Zotero warns on duplicates. Skip and log rather than creating duplicates.
  • Missing metadata: If DOI import returns incomplete metadata, inform the user which fields are missing rather than silently leaving them blank.
Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 12d ago First seen · 55 lines · 49 tokens per session scan A 1df7cd0de509

Subscribe to this mod's changes

paper-zotero is a skill published in the GitHub repository Geek96/paper-research-skill (21 stars, last pushed 2mo ago), licensed MIT. It adds 49 tokens to every session and 455 once invoked, about $0.0002 per session on Opus 5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-30.

Related

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