gitnexus-debugging

gitnexus-debugging is a skill for Claude Code, Codex from haoxiang-xu/PuPu. It costs 46 tokens per session (1,240 once invoked), scanned A, original, Apache-2.0.

A debugging skill that uses GitNexus to trace bugs, errors, and unexpected behavior through a codebase. It first identifies the correct repository and checks whether its code index is current.

In plain words
What is it for?
Use it to investigate failing functions, error messages, HTTP 500 responses, unexpected results, and callers of a suspicious method.
Why use it?
It provides a repeatable way to find where a failure originates and which functions or endpoints lead to it.

Skill for Claude CodeCodex

Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

agentmods
npx agentmods add skills/haoxiang-xu/pupu/gitnexus-debugging
Any agent
npx skills add haoxiang-xu/PuPu --skill gitnexus-debugging
Clone the repo
git clone --depth 1 https://github.com/haoxiang-xu/PuPu

Made for: Claude Code, Codex.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for gitnexus-debugging

README.md
[![agentmods](https://agentmods.dev/badge/skills/haoxiang-xu/pupu/gitnexus-debugging.svg)](https://agentmods.dev/skills/haoxiang-xu/pupu/gitnexus-debugging)
Your own site
<a href="https://agentmods.dev/skills/haoxiang-xu/pupu/gitnexus-debugging"><img src="https://agentmods.dev/badge/skills/haoxiang-xu/pupu/gitnexus-debugging.svg" alt="Measured on agentmods" height="20"></a>
Per session 46 Skills are progressive disclosure: only the name and description are preloaded; the body loads when the skill is used.
When invoked 1,240 The whole file, excluding the scripts and references it only reads on demand.
Security scan A 0 findings. Scan, not verified.
Origin original No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5 $0.00046 $0.01240
Opus 5 $0.00023 $0.00620
Sonnet 5 $0.00009 $0.00248
Haiku 4.5 $0.00005 $0.00124

Measured 5d ago against content hash 4d79e789cdc4, method: parsed. Prices are Anthropic first-party input rates as of 2026-08-30, from the pricing page.

Security

Grade A, and why

gitnexus-debugging scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 5d ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

.claude/skills/gitnexus-debugging/SKILL.md · 132 lines

How it starts

The opening of the file, as written. The whole thing — 132 lines — stays where its author put it; the contents beside it link to each section on GitHub.

Debugging with GitNexus

When to Use

  • "Why is this function failing?"
  • "Trace where this error comes from"
  • "Who calls this method?"
  • "This endpoint returns 500"
  • Investigating bugs, errors, or unexpected behavior

Bind the repository first

A root cause traced in the wrong repository is a wrong root cause.

Call list_repos {} before the first tool call. With one indexed repository, use the examples below as written. With more than one, pass repo on every call: an omitted repo normally errors, but under an MCP policy with a configured default it resolves to that default silently. If you cannot tell which repository is meant, stop and ask. This matters most for cypher, whose statement carries no in-band hint of which database it ran against.

list_repos is paginated, so page with offset: pagination.nextOffset until hasMore is false before concluding a repository is absent.

A stale index describes the code from before your bug, so refresh before trusting a trace, and state the repository and index freshness with the diagnosis.

Workflow

0. list_repos {}                                          → Bind repo
1. query({search_query: "<error or symptom>"})            → Find related execution flows
2. context({name: "<suspect>"})                    → See callers/callees/processes
3. READ gitnexus://repo/{name}/process/{name}                → Trace execution flow
4. cypher({statement: "MATCH path..."})                 → Custom traces if needed

If "Index is stale" → run node .gitnexus/run.cjs analyze in terminal.

Checklist

- [ ] list_repos {} — bind repo; explicit repo when >1 indexed, ask if ambiguous
- [ ] Understand the symptom (error message, unexpected behavior)
- [ ] query for error text or related code
- [ ] Identify the suspect function from returned processes
- [ ] context to see callers and callees
- [ ] Trace execution flow via process resource if applicable
- [ ] cypher for custom call chain traces if needed
- [ ] Read source files to confirm root cause
- [ ] State the repository and index freshness with the diagnosis

Read the full file on GitHub · 132 lines

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 5d ago First seen · 132 lines · 46 tokens per session scan A 4d79e789cdc4

Subscribe to this mod's changes

gitnexus-debugging is a skill published in the GitHub repository haoxiang-xu/PuPu (36 stars, last pushed today), licensed Apache-2.0. It adds 46 tokens to every session and 1,240 once invoked, about $0.0002 per session on Opus 5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-30.

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