gitnexus-cli

A command guide for GitNexus, a tool that indexes a repository’s code and relationships for search and analysis.

In plain words
What is it for?
Use it to analyze a repository, check whether its index is current, regenerate context files, remove a broken index, or generate a wiki.
Why use it?
It explains how to create, refresh, inspect, clean, and use the index when exploring or reviewing a codebase.

Skill for Claude CodeCodex

Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

agentmods
npx agentmods add skills/hunchom/claude-code-ssh/gitnexus-cli
Any agent
npx skills add hunchom/claude-code-ssh --skill gitnexus-cli
Clone the repo
git clone --depth 1 https://github.com/hunchom/claude-code-ssh

Made for: Claude Code, Codex.

Per session 59 Skills are progressive disclosure: only the name and description are preloaded; the body loads when the skill is used.
When invoked 782 The whole file, excluding the scripts and references it only reads on demand.
Security scan A 0 findings. Scan, not verified.
Origin 81% copy Near-identical to another mod in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5 $0.00059 $0.00782
Opus 5 $0.00030 $0.00391
Sonnet 5 $0.00012 $0.00156
Haiku 4.5 $0.00006 $0.00078

Measured yesterday against content hash e28f79d4ea24, method: parsed. Prices are Anthropic first-party input rates as of 2026-08-30, from the pricing page.

Security

Grade A, and why

gitnexus-cli scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured yesterday.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

Origin

This is a copy

81% identical to gitnexus-cli — 3 lines differ, which has more behind it and is treated as the original. This page carries a canonical link to it rather than competing with it.

.claude/skills/gitnexus/gitnexus-cli/SKILL.md · 83 lines

How it starts

The opening of the file, as written. The whole thing — 83 lines — stays where its author put it; the contents beside it link to each section on GitHub.

GitNexus CLI Commands

All commands work via npx — no global install required.

Commands

analyze — Build or refresh the index

npx gitnexus analyze

Run from the project root. This parses all source files, builds the knowledge graph, writes it to .gitnexus/, and generates CLAUDE.md / AGENTS.md context files.

Flag Effect
--force Force full re-index even if up to date
--embeddings Enable embedding generation for semantic search (off by default)

When to run: First time in a project, after major code changes, or when gitnexus://repo/{name}/context reports the index is stale. In Claude Code, a PostToolUse hook runs analyze automatically after git commit and git merge, preserving embeddings if previously generated.

status — Check index freshness

npx gitnexus status

Shows whether the current repo has a GitNexus index, when it was last updated, and symbol/relationship counts. Use this to check if re-indexing is needed.

clean — Delete the index

npx gitnexus clean

Deletes the .gitnexus/ directory and unregisters the repo from the global registry. Use before re-indexing if the index is corrupt or after removing GitNexus from a project.

Flag Effect
--force Skip confirmation prompt
--all Clean all indexed repos, not just the current one

wiki — Generate documentation from the graph

npx gitnexus wiki

Generates repository documentation from the knowledge graph using an LLM. Requires an API key (saved to ~/.gitnexus/config.json on first use).

Flag Effect
--force Force full regeneration
--model <model> LLM model (default: minimax/minimax-m2.5)
--base-url <url> LLM API base URL
--api-key <key> LLM API key
--concurrency <n> Parallel LLM calls (default: 3)
--gist Publish wiki as a public GitHub Gist

Read the full file on GitHub · 83 lines

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. yesterday First seen · 83 lines · 59 tokens per session scan A e28f79d4ea24

Subscribe to this mod's changes

gitnexus-cli is a skill published in the GitHub repository hunchom/claude-code-ssh (2 stars, last pushed 1mo ago), licensed MIT. It adds 59 tokens to every session and 782 once invoked, about $0.0003 per session on Opus 5. A static security scan graded it A with 0 findings. It is 81% identical to gitnexus-cli, differing in 3 lines, and is treated as a copy.

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