graphify

graphify is a skill for Claude Code, Codex from jjmartres/ai-coding-agents. It costs 27 tokens per session (13,759 once invoked), scanned A, a copy of graphify-windows, MIT.

A file-analysis workflow that turns a folder of documents into a connected map of related information. It produces an interactive HTML view, JSON for GraphRAG (search that retrieves related information), and a plain-language report.

In plain words
What is it for?
Mapping documents, grouping related topics, updating the map after files change, and exporting it for tools such as Obsidian, Gephi, yEd, or Neo4j.
Why use it?
It makes large collections easier to explore and records which connections were found or inferred instead of hiding the evidence.

Skill for Claude CodeCodex

Written for no agent in particular: nothing here depends on one. Also seen: mentions CLAUDE.md; mentions subagents; mentions Claude Code.

Good fit Mapping documents, grouping related topics, updating the map after files change, and exporting it for tools such as Obsidian, Gephi, yEd, or Neo4j.

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Install with agentmods
npx agentmods add skills/jjmartres/ai-coding-agents/graphify
Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

Any agent
npx skills add jjmartres/ai-coding-agents --skill graphify
Clone the repo
git clone --depth 1 https://github.com/jjmartres/ai-coding-agents

Made for: Claude Code, Codex.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for graphify

README.md
[![agentmods](https://agentmods.dev/badge/skills/jjmartres/ai-coding-agents/graphify/github.svg)](https://agentmods.dev/skills/jjmartres/ai-coding-agents/graphify)
Your own site
<a href="https://agentmods.dev/skills/jjmartres/ai-coding-agents/graphify"><img src="https://agentmods.dev/badge/skills/jjmartres/ai-coding-agents/graphify/github.svg" alt="Measured on agentmods" height="20"></a>

Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.

agentmods 80×15 button for graphify

Your own site · 80×15
<a href="https://agentmods.dev/skills/jjmartres/ai-coding-agents/graphify"><img src="https://agentmods.dev/badge/skills/jjmartres/ai-coding-agents/graphify.svg" alt="Reviewed on agentmods" width="80" height="20"></a>
Per session 27 Skills are progressive disclosure: only the name and description are preloaded; the body loads when the skill is used.
When invoked 13,759 The whole file, excluding the scripts and references it only reads on demand.
Security scan A 0 findings. A grade says what 26 rules found in the file — not that it is safe.
Origin 88% copy Near-identical to another mod in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.00027 $0.13759
Opus 5.5 $0.00011 $0.05504
Sonnet 5.5 $0.00005 $0.02752
Haiku 4.5 $0.00003 $0.01376

Measured 20d ago against content hash 5c66f56a7551, method: parsed. Prices are Anthropic first-party input rates as of 2026-10-07, from the pricing page.

Security

Grade A, and why

graphify scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 20d ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

Origin

This is a copy

88% identical to graphify-windows — 727 lines differ, which has more behind it and is treated as the original. This page carries a canonical link to it rather than competing with it.

shared/.ai-agents/skills/graphify/SKILL.md · 1,312 lines

How it starts

The opening of the file, as written. The whole thing — 1,312 lines — stays where its author put it; the contents beside it link to each section on GitHub.

/graphify

Turn any folder of files into a navigable knowledge graph with community detection, an honest audit trail, and three outputs: interactive HTML, GraphRAG-ready JSON, and a plain-language GRAPH_REPORT.md.

Usage

/graphify                                             # full pipeline on current directory → Obsidian vault
/graphify <path>                                      # full pipeline on specific path
/graphify <path> --mode deep                          # thorough extraction, richer INFERRED edges
/graphify <path> --update                             # incremental - re-extract only new/changed files
/graphify <path> --cluster-only                       # rerun clustering on existing graph
/graphify <path> --no-viz                             # skip visualization, just report + JSON
/graphify <path> --html                               # (HTML is generated by default - this flag is a no-op)
/graphify <path> --svg                                # also export graph.svg (embeds in Notion, GitHub)
/graphify <path> --graphml                            # export graph.graphml (Gephi, yEd)
/graphify <path> --neo4j                              # generate graphify-out/cypher.txt for Neo4j
/graphify <path> --neo4j-push bolt://localhost:7687   # push directly to Neo4j
/graphify <path> --mcp                                # start MCP stdio server for agent access
/graphify <path> --watch                              # watch folder, auto-rebuild on code changes (no LLM needed)
/graphify add <url>                                   # fetch URL, save to ./raw, update graph
/graphify add <url> --author "Name"                   # tag who wrote it
/graphify add <url> --contributor "Name"              # tag who added it to the corpus
/graphify query "<question>"                          # BFS traversal - broad context
/graphify query "<question>" --dfs                    # DFS - trace a specific path
/graphify query "<question>" --budget 1500            # cap answer at N tokens
/graphify path "AuthModule" "Database"                # shortest path between two concepts
/graphify explain "SwinTransformer"                   # plain-language explanation of a node

Read the full file on GitHub · 1,312 lines

Files

What ships with it

1 file beside SKILL.md in the same directory: the scripts, references and assets a skill reads on demand. Not counted in the per-session cost; read them before you install if any of them is executable.

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 20d ago Changed · +19 lines 5c66f56a7551
  2. 21d ago First seen · 1,293 lines · 27 tokens per session scan A 659f019a5158

Subscribe to this mod's changes

graphify is a skill published in the GitHub repository jjmartres/ai-coding-agents (49 stars, last pushed 10d ago), licensed MIT. It adds 27 tokens to every session and 13,759 once invoked, about $0.0001 per session on Opus 5.5. A static security scan graded it A with 0 findings. It is 88% identical to graphify-windows, differing in 727 lines, and is treated as a copy.

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