Getting it into your agent
One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.
npx agentmods add skills/joonlab/joonlab-claudecode-setting-for-share/graphifynpx skills add joonlab/joonlab-claudecode-setting-for-share --skill graphifygit clone --depth 1 https://github.com/joonlab/joonlab-claudecode-setting-for-shareWrote this? Show the measurements
A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.
[](https://agentmods.dev/skills/joonlab/joonlab-claudecode-setting-for-share/graphify)<a href="https://agentmods.dev/skills/joonlab/joonlab-claudecode-setting-for-share/graphify"><img src="https://agentmods.dev/badge/skills/joonlab/joonlab-claudecode-setting-for-share/graphify.svg" alt="Measured on agentmods" height="20"></a>What it costs to keep this loaded
Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.
| Model | Per session | Once invoked |
|---|---|---|
| Fable 5 | $0.00027 | $0.12181 |
| Opus 5 | $0.00014 | $0.06091 |
| Sonnet 5 | $0.00005 | $0.02436 |
| Haiku 4.5 | $0.00003 | $0.01218 |
Grade A, and why
graphify scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 5d ago.
A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.
Nothing flagged
None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.
This is a copy
83% identical to graphify — 229 lines differ, which has more behind it and is treated as the original. This page carries a canonical link to it rather than competing with it.
How it starts
The opening of the file, as written. The whole thing — 1,221 lines — stays where its author put it; the contents beside it link to each section on GitHub.
/graphify
Turn any folder of files into a navigable knowledge graph with community detection, an honest audit trail, and three outputs: interactive HTML, GraphRAG-ready JSON, and a plain-language GRAPH_REPORT.md.
Usage
/graphify # full pipeline on current directory → Obsidian vault
/graphify <path> # full pipeline on specific path
/graphify <path> --mode deep # thorough extraction, richer INFERRED edges
/graphify <path> --update # incremental - re-extract only new/changed files
/graphify <path> --cluster-only # rerun clustering on existing graph
/graphify <path> --no-viz # skip visualization, just report + JSON
/graphify <path> --html # (HTML is generated by default - this flag is a no-op)
/graphify <path> --svg # also export graph.svg (embeds in Notion, GitHub)
/graphify <path> --graphml # export graph.graphml (Gephi, yEd)
/graphify <path> --neo4j # generate graphify-out/cypher.txt for Neo4j
/graphify <path> --neo4j-push bolt://localhost:7687 # push directly to Neo4j
/graphify <path> --mcp # start MCP stdio server for agent access
/graphify <path> --watch # watch folder, auto-rebuild on code changes (no LLM needed)
/graphify <path> --wiki # build agent-crawlable wiki (index.md + one article per community)
/graphify <path> --obsidian --obsidian-dir ~/vaults/my-project # write vault to custom path (e.g. existing vault)
/graphify add <url> # fetch URL, save to ./raw, update graph
/graphify add <url> --author "Name" # tag who wrote it
/graphify add <url> --contributor "Name" # tag who added it to the corpus
/graphify query "<question>" # BFS traversal - broad context
/graphify query "<question>" --dfs # DFS - trace a specific path
/graphify query "<question>" --budget 1500 # cap answer at N tokens
/graphify path "AuthModule" "Database" # shortest path between two concepts
/graphify explain "SwinTransformer" # plain-language explanation of a node
What ships with it
1 file beside SKILL.md in the same directory: the scripts, references and assets a skill reads on demand. Not counted in the per-session cost; read them before you install if any of them is executable.
What this file has done since we first saw it
Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.
- 5d ago First seen · 1,221 lines · 27 tokens per session scan A a8c19806704b
graphify is a skill published in the GitHub repository joonlab/joonlab-claudecode-setting-for-share (10 stars, last pushed 27d ago), licensed MIT. It adds 27 tokens to every session and 12,181 once invoked, about $0.0001 per session on Opus 5. A static security scan graded it A with 0 findings. It is 83% identical to graphify, differing in 229 lines, and is treated as a copy.
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