second-brain

second-brain is a skill for Claude Code, Codex from josherau/claude-operating-core. It costs 104 tokens per session (1,619 once invoked), scanned A, original, MIT.

A file-based second brain: a folder of Markdown notes that carries knowledge from one coding-agent session to the next. It sets up the vault, defines how it is organized, and requires sessions to read from and write back to it.

In plain words
What is it for?
Use it to create a knowledge vault, register projects and conventions, save session logs and learnings, and keep information available for future sessions.
Why use it?
It prevents useful context and lessons from disappearing when a session ends.

Skill for Claude CodeCodex

Part of the operating-core plugin — 7 skills, 1 agent shipped together

Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

agentmods
npx agentmods add skills/josherau/claude-operating-core/second-brain
Any agent
npx skills add josherau/claude-operating-core --skill second-brain
Clone the repo
git clone --depth 1 https://github.com/josherau/claude-operating-core

Made for: Claude Code, Codex.

Or install operating-core, the plugin that ships this one along with the rest of its 7 skills, 1 agent.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for second-brain

README.md
[![agentmods](https://agentmods.dev/badge/skills/josherau/claude-operating-core/second-brain.svg)](https://agentmods.dev/skills/josherau/claude-operating-core/second-brain)
Your own site
<a href="https://agentmods.dev/skills/josherau/claude-operating-core/second-brain"><img src="https://agentmods.dev/badge/skills/josherau/claude-operating-core/second-brain.svg" alt="Measured on agentmods" height="20"></a>
Per session 104 Skills are progressive disclosure: only the name and description are preloaded; the body loads when the skill is used.
When invoked 1,619 The whole file, excluding the scripts and references it only reads on demand.
Security scan A 0 findings. Scan, not verified.
Origin original No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5 $0.00104 $0.01619
Opus 5 $0.00052 $0.00809
Sonnet 5 $0.00021 $0.00324
Haiku 4.5 $0.00010 $0.00162

Measured 4d ago against content hash b2ea6bd28610, method: parsed. Prices are Anthropic first-party input rates as of 2026-08-30, from the pricing page.

Security

Grade A, and why

second-brain scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 4d ago.

The scan reads SKILL.md. This mod also ships 1 executable file (references/session-log-nudge.sh), listed below but not scanned — reading those needs a real analyzer, not pattern matching.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

skills/second-brain/SKILL.md · 82 lines

How it starts

The opening of the file, as written. The whole thing — 82 lines — stays where its author put it; the contents beside it link to each section on GitHub.

Second Brain — the vault every session reads and feeds

A session's context dies when the session ends. A vault of plain markdown files does not. This skill sets up and operates that vault: one folder tree that holds the registry of everything you work on, the conventions for writing it down, and the accumulated lessons that make every future session smarter than the last one.

The machinery is three habits enforced by files:

  1. Boot from the brain. Every session starts by reading the vault's own CLAUDE.md — the registry, the rules, the pointers to deeper indexes.
  2. Write back before ending. Substantive sessions end with a session log, updated notes, and new learnings. No mental notes; files or it didn't happen.
  3. Garden continuously. A recurring pass (see the vault-gardener skill) removes entropy so recall stays precise as the vault grows.

Mode 1: SETUP — bootstrap a new vault

Trigger: "second-brain setup" or any request to create a knowledge vault. Ask only for two things if not evident: where the vault should live ({VAULT}, e.g. ~/Documents/brain — pick a synced folder if the user works across machines) and the user's main work contexts (businesses, clients, or domains — these become the registry rows and #ctx/* tags).

  1. Create the structure:
{VAULT}/
├── Projects/          One folder per active project; each gets a Title Case index note
├── Areas/             Ongoing responsibilities with no end date
├── Resources/         Reference material, guides, imported docs
├── Inbox/             Quick capture; the gardener files it later
├── Session-Logs/      One subfolder per project slug
├── Archive/           Completed/inactive items from anywhere above
├── Templates/         Note templates
└── System/
    ├── learnings/     One lesson per file (see extract-approach)
    ├── standards/     Pass/fail quality bars per deliverable type
    └── dashboards/    Optional overview notes

Projects/Areas/Resources/Archive is Tiago Forte's PARA method; Session-Logs and System are our additions — the session memory and the self-improvement machinery respectively.

Read the full file on GitHub · 82 lines

Files

What ships with it

4 files beside SKILL.md in the same directory: the scripts, references and assets a skill reads on demand. Not counted in the per-session cost; read them before you install if any of them is executable.

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 4d ago First seen · 82 lines · 104 tokens per session scan A b2ea6bd28610

Subscribe to this mod's changes

second-brain is a skill published in the GitHub repository josherau/claude-operating-core (3 stars, last pushed 24d ago), licensed MIT. It adds 104 tokens to every session and 1,619 once invoked, about $0.0005 per session on Opus 5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-31.

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